CK740218

Overview
NameCK740218
Unique NameCK740218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_ASCSU (Catalase OS=Ascaris suum GN=CAT PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.780e-20
Identity = 58/134 (43.28%), Postives = 79/134 (58.96%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHR----NNHYDG-FMNFMHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEKENNFKQP 401
            VG++VLNKN  N+FAE E +AF P  VVPGI +S DKMLQ R+FAY DTQ HRLGPNY+ LP+N   CP+R    N   DG F    ++     Y P+ ++           +  ++G  ++   + E+NF QP
Sbjct:  312 VGKIVLNKNPTNYFAEVEQIAFAPSHVVPGIEFSPDKMLQGRLFAYPDTQFHRLGPNYVQLPIN---CPYRSRAHNTQRDGCFALDYNQGGMPTYHPNSFNGAIERTDVKESAWSVSGDVDRFNGDDEDNFSQP 442          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATE_BACSU (Catalase-2 OS=Bacillus subtilis GN=katE PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.325e-20
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRL-GPNYLMLPVNAPKCPHRNNHYDGF 248
            +G++ LN+N DN FAE E +AF+PG VVPGI ++ND +LQ R+F+Y DTQ  RL GPN+  +P+N P CP  NN YDG+
Sbjct:  320 IGKMTLNRNQDNVFAETEQVAFHPGNVVPGIDFTNDPLLQGRLFSYTDTQLIRLGGPNFHEIPINRPVCPFHNNQYDGY 398          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_DESVM (Catalase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=katA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.325e-20
Identity = 52/114 (45.61%), Postives = 69/114 (60.53%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNF-MHRDEEVDYFPSRYDPTRHAERYPIPSDVITG 353
            VG L LN+N +N+FAE E  AFNP  VVPGI +S DKMLQ R+F+YGD  R+RLG N+ ++PVNA +CP  + H DG M    +    + Y P+ Y   +    +  P   I G
Sbjct:  292 VGVLELNRNPENYFAEVEQAAFNPANVVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHLIPVNAARCPVHSYHRDGAMRVDGNHGSTLAYEPNSYGEWQEQPDFAEPPLAIRG 405          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATE_BACPF (Catalase (Fragment) OS=Bacillus pseudofirmus GN=katE PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.037e-20
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRL-GPNYLMLPVNAPKCPHRNNHYDGF 248
            +G++ LN+N+DN FAE E +AF+PG VVPGI ++ND +LQ R+F+Y DTQ  RL GPN+  LP+N P CP  NN  DG+
Sbjct:  317 IGKMTLNRNVDNVFAETEQVAFHPGHVVPGIDFTNDPLLQGRLFSYTDTQLIRLGGPNFHELPINRPVCPFHNNQRDGY 395          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATB_DICDI (Catalase-B OS=Dictyostelium discoideum GN=catB PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.037e-20
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRL-GPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYD 302
            P+GR+V+++N DNFFAE E +AF    VVPGI +SND +LQ RIF+Y DTQ  RL GPN+  +P+N P CP  NN  DG            YFP+  D
Sbjct:  310 PLGRMVIDRNPDNFFAETEQVAFCVSHVVPGIDFSNDPLLQGRIFSYLDTQLSRLGGPNFNEIPINRPVCPFANNQRDGIHRMTINKGGASYFPNSID 407          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_PSEAE (Catalase OS=Pseudomonas aeruginosa GN=katA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.966e-20
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNF--MHRDEEVDYFPSRYD 302
            VG   LN+N DN+FAE E  AF P  VVPGI +S DKMLQ R+F+YGD  R+RLG N+  +PVNA +CPH+  H DG M     +  + V Y P+ ++
Sbjct:  293 VGFFELNRNPDNYFAEVEQAAFTPANVVPGIGFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAARCPHQVYHRDGGMRVDGNNAHQRVTYEPNSFN 390          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_METBF (Catalase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=kat PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.966e-20
Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-CPHRNNHYDGFMNF-MHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEKEN-NFKQPGERY 413
            +G+LVLN+N  N+FAE E  AF+P  +VPGI  S DKMLQ R+F+Y DT  HRLGPNY ++PVNAPK  P  +   DGFM    +     +Y+P+ +        Y  P   ++G   +      N +F Q G  Y
Sbjct:  296 IGKLVLNRNPTNYFAEVEQAAFSPANLVPGIGISPDKMLQGRVFSYHDTHIHRLGPNYNLIPVNAPKYSPENSYQRDGFMRVDANGGSGPNYWPNSFGGPSPDSVYLEPPFGVSGLAARTLYTHPNDDFVQAGNLY 431          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_MOUSE (Catalase OS=Mus musculus GN=Cat PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 5.180e-20
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHR----NNHYDGFMNFMHRDE--EVDYFPSRY 299
            PVG+LVLNKN  N+FAE E +AF+P  + PGI  S DKMLQ R+FAY DT RHRLGPNYL +PVN   CP+R    N   DG M  MH ++    +Y+P+ +
Sbjct:  312 PVGKLVLNKNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVN---CPYRARVANYQRDGPM-CMHDNQGGAPNYYPNSF 409          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_RANRU (Catalase OS=Rana rugosa GN=cat PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.766e-20
Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAP-KCPHRNNHYDGFMNFM-HRDEEVDYFPSRY-----DPTRHAERYPIPSDV 344
            PVG+LVLN+N  N+FAE E +AF+P  + PGI  S DKMLQ R+F+Y DT RHRLG NYL LPVN P K    N   DG M F  ++    +YFP+ +      P     ++ + +DV
Sbjct:  312 PVGKLVLNRNPANYFAEVEQIAFDPSNMPPGIEPSPDKMLQGRLFSYPDTHRHRLGANYLQLPVNCPYKARVANYQRDGPMCFSDNQGGAPNYFPNSFSAPENQPAARESKFRVSADV 429          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_RAT (Catalase OS=Rattus norvegicus GN=Cat PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.836e-20
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHR----NNHYDGFMNFMHRDE--EVDYFPSRY 299
            PVG+LVLN+N  N+FAE E +AF+P  + PGI  S DKMLQ R+FAY DT RHRLGPNYL +PVN   CP+R    N   DG M  MH ++    +Y+P+ +
Sbjct:  312 PVGKLVLNRNPANYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVN---CPYRARVANYQRDGPM-CMHDNQGGAPNYYPNSF 409          
The following BLAST results are available for this feature:
BLAST of CK740218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CATA_ASCSU1.780e-2043.28Catalase OS=Ascaris suum GN=CAT PE=2 SV=2[more]
CATE_BACSU2.325e-2055.70Catalase-2 OS=Bacillus subtilis GN=katE PE=3 SV=2[more]
CATA_DESVM2.325e-2045.61Catalase OS=Desulfovibrio vulgaris (strain Miyazak... [more]
CATE_BACPF3.037e-2055.70Catalase (Fragment) OS=Bacillus pseudofirmus GN=ka... [more]
CATB_DICDI3.037e-2050.00Catalase-B OS=Dictyostelium discoideum GN=catB PE=... [more]
CATA_PSEAE3.966e-2050.00Catalase OS=Pseudomonas aeruginosa GN=katA PE=1 SV... [more]
CATA_METBF3.966e-2041.91Catalase OS=Methanosarcina barkeri (strain Fusaro ... [more]
CATA_MOUSE5.180e-2053.92Catalase OS=Mus musculus GN=Cat PE=1 SV=3[more]
CATA_RANRU6.766e-2046.61Catalase OS=Rana rugosa GN=cat PE=2 SV=3[more]
CATA_RAT8.836e-2052.94Catalase OS=Rattus norvegicus GN=Cat PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6713 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740218 ID=CK740218; Name=CK740218; organism=Citrus sinensis; type=EST; length=413bp
CCTCGTGCCGGCCAGTTGGACGCTTGGTCTTGAACAAGAACATCGATAAT
TTCTTTGCGGAAAATGAAATGCTTGCATTTAACCCTGGTATCGTGGTTCC
TGGGATCTACTACTCAAATGATAAGATGCTCCAATGTCGAATCTTTGCCT
ATGGTGATACCCAGAGGCATCGCCTTGGACCCAACTACTTGATGCTTCCA
GTTAATGCACCCAAATGTCCTCATCGCAACAATCATTATGATGGTTTCAT
GAATTTCATGCACAGGGATGAGGAGGTCGATTACTTTCCTTCGAGGTATG
ATCCTACTCGTCATGCTGAGAGATATCCCATTCCTTCTGATGTAATTACA
GGAAGGCGTGAGAAGGCTTGCATTGAGAAGGAAAACAACTTCAAGCAGCC
TGGAGAGAGATAC
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