CK740218

Overview
NameCK740218
Unique NameCK740218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8246 contig Csv1_Contig8246:296..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_DICDI (Catalase-A OS=Dictyostelium discoideum GN=catA PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.358e-19
Identity = 58/138 (42.03%), Postives = 78/138 (56.52%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAP---KCPHRNNHYDGFMNFM-HRDEEVDYFPSRY-DPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            +GR+VLN+N +N+FAE E  AF+P  +VPGI  S DKMLQ R+F+Y DT RHRLG NY  +PVN P   K   +N   DGFM    +  +  +Y P+ +  P  H E      DV      +      ++F QPG+ Y
Sbjct:  293 IGRMVLNRNPENYFAEVEQAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLY 430          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_CANFA (Catalase OS=Canis familiaris GN=CAT PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.358e-19
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAP-KCPHRNNHYDGFMNFM-HRDEEVDYFPSRY 299
            PVG+LVLN+N  N+FAE E +AF+P  + PGI  S DKMLQ R+FAY DT RHRLGPNYL +PVN P +    N   DG M  + ++    +Y+P+ +
Sbjct:  312 PVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPFRARVANYQRDGPMCMLDNQGGAPNYYPNSF 409          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_CAVPO (Catalase OS=Cavia porcellus GN=CAT PE=2 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 4.385e-19
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHR 227
            PVG+LVLN+N  N+FAE E +AF+P  + PGI  S DKMLQ R+FAY DT RHRLGPNYL +PVN   CP+R
Sbjct:  312 PVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVN---CPYR 380          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_VIBVY (Catalase OS=Vibrio vulnificus (strain YJ016) GN=VVA0294 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.728e-19
Identity = 55/143 (38.46%), Postives = 74/143 (51.75%), Query Frame = 3
Query:    9 RPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTR--------HAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            + VG + LN+  DNFF E E  AF P  ++PGI  S D++LQ R+FAY DTQ +RLG N   LPVN+PK P  N++ DG  N       VD     Y+P+R         A     P   ++G  ++  I    +F Q G  Y
Sbjct:  306 KKVGTMTLNRVPDNFFLETEQSAFAPSNIIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNSPKSPVANHNQDGPSNNSTGLGNVDSLDVNYEPSRLVNLTVDKQARAVETP---LSGHVQQQAIRNPRDFFQAGVLY 445          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_VIBVU (Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.728e-19
Identity = 55/143 (38.46%), Postives = 74/143 (51.75%), Query Frame = 3
Query:    9 RPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTR--------HAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            + VG + LN+  DNFF E E  AF P  ++PGI  S D++LQ R+FAY DTQ +RLG N   LPVN+PK P  N++ DG  N       VD     Y+P+R         A     P   ++G  ++  I    +F Q G  Y
Sbjct:  306 KKVGTMTLNRVPDNFFLETEQSAFAPSNIIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNSPKSPVANHNQDGPSNNSTGLGNVDSLDVNYEPSRLVNLTVDKQARAVETP---LSGHVQQQAIRNPRDFFQAGVLY 445          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_RHIME (Catalase A OS=Rhizobium meliloti GN=katA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.480e-19
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMN 254
            +G L LN+N +N+FAE E  AF+P  +VPGI +S DK+LQ RIF+Y D  R+RLG +Y  +PVN P+CP  + H DG MN
Sbjct:  292 IGVLELNRNPENYFAEIENAAFSPSNIVPGIGFSPDKVLQARIFSYADAHRYRLGTHYEHIPVNQPRCPVHHYHRDGQMN 371          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_SCHPO (Catalase OS=Schizosaccharomyces pombe GN=cta1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.770e-19
Identity = 48/105 (45.71%), Postives = 59/105 (56.19%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTRHAERYP 329
            VGR  LN+N  NFFA+ E   F+P  +VPGI  S D +LQ R F+Y DT RHRLG N+  +PVN+PKCP  N   DG MN          +PS   P    +  P
Sbjct:  299 VGRFTLNQNPTNFFADIEQAGFSPSHMVPGIEVSADPVLQVRTFSYPDTHRHRLGANFEQIPVNSPKCPVFNYSRDGPMNVNGNQGNWPNYPSSIRPLAKVQYEP 403          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_DANRE (Catalase OS=Danio rerio GN=cat PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.770e-19
Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHR----NNHYDGFMNFMHRDE--EVDYFPSRY 299
            PVGR VLN+N  N+FAE E LAF+P  + PGI  S DKMLQ R+F+Y DT RHRLG NYL LPVN   CP+R    N   DG M  MH ++    +Y+P+ +
Sbjct:  312 PVGRFVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFSYPDTHRHRLGANYLQLPVN---CPYRTRVANYQRDGPM-CMHDNQGGAPNYYPNSF 409          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_STAES (Catalase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=katA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.276e-18
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VG   LN+N +N+F + E  AF P  +VPG+ YS DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M F+  ++     Y+P+    Y+     ++ P P+D   G       + +N F+QPG+ +
Sbjct:  294 VGEFELNRNPENYFLDVEQAAFTPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENLCPFSR---DGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDG-DGYEYNYRQDDDNYFEQPGKLF 434          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_STAEQ (Catalase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=katA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.276e-18
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VG   LN+N +N+F + E  AF P  +VPG+ YS DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M F+  ++     Y+P+    Y+     ++ P P+D   G       + +N F+QPG+ +
Sbjct:  294 VGEFELNRNPENYFLDVEQAAFTPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENLCPFSR---DGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDG-DGYEYNYRQDDDNYFEQPGKLF 434          
The following BLAST results are available for this feature:
BLAST of CK740218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CATA_DICDI3.358e-1942.03Catalase-A OS=Dictyostelium discoideum GN=catA PE=... [more]
CATA_CANFA3.358e-1951.02Catalase OS=Canis familiaris GN=CAT PE=1 SV=3[more]
CATA_CAVPO4.385e-1963.89Catalase OS=Cavia porcellus GN=CAT PE=2 SV=4[more]
CATA_VIBVY5.728e-1938.46Catalase OS=Vibrio vulnificus (strain YJ016) GN=VV... [more]
CATA_VIBVU5.728e-1938.46Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=... [more]
CATA_RHIME7.480e-1953.75Catalase A OS=Rhizobium meliloti GN=katA PE=3 SV=2[more]
CATA_SCHPO9.770e-1945.71Catalase OS=Schizosaccharomyces pombe GN=cta1 PE=1... [more]
CATA_DANRE9.770e-1952.94Catalase OS=Danio rerio GN=cat PE=2 SV=1[more]
CATA_STAES1.276e-1837.93Catalase OS=Staphylococcus epidermidis (strain ATC... [more]
CATA_STAEQ1.276e-1837.93Catalase OS=Staphylococcus epidermidis (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6713 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740218 ID=CK740218; Name=CK740218; organism=Citrus sinensis; type=EST; length=413bp
CCTCGTGCCGGCCAGTTGGACGCTTGGTCTTGAACAAGAACATCGATAAT
TTCTTTGCGGAAAATGAAATGCTTGCATTTAACCCTGGTATCGTGGTTCC
TGGGATCTACTACTCAAATGATAAGATGCTCCAATGTCGAATCTTTGCCT
ATGGTGATACCCAGAGGCATCGCCTTGGACCCAACTACTTGATGCTTCCA
GTTAATGCACCCAAATGTCCTCATCGCAACAATCATTATGATGGTTTCAT
GAATTTCATGCACAGGGATGAGGAGGTCGATTACTTTCCTTCGAGGTATG
ATCCTACTCGTCATGCTGAGAGATATCCCATTCCTTCTGATGTAATTACA
GGAAGGCGTGAGAAGGCTTGCATTGAGAAGGAAAACAACTTCAAGCAGCC
TGGAGAGAGATAC
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