CK740218

Overview
NameCK740218
Unique NameCK740218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_BRUSU (Catalase OS=Brucella suis GN=katA PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.276e-18
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMN 254
            +G + LN+N +N+F E E  AF+P  +VPGI +S DKMLQ RIF+Y D  RHRLG +Y  +PVN PKC   + H DG MN
Sbjct:  292 IGVMELNRNPENYFTEVENAAFSPSNIVPGIGFSPDKMLQARIFSYADAHRHRLGTHYESIPVNQPKCLVHHYHRDGQMN 371          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_STAEP (Catalase OS=Staphylococcus epidermidis GN=katA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.176e-18
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VG   LN+N +N+F + E  AF P  +VPG+ YS DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M F+  ++     Y+P+    Y+     ++ P P+D   G       + +N F+QPG+ +
Sbjct:  294 VGEFELNRNPENYFLDVEQAAFAPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENLCPFSR---DGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDG-DGYEYNYRQDDDNYFEQPGKLF 434          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_ONCVE (Catalase OS=Onchocerca volvulus endobacterium GN=cat PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.176e-18
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNF-MHRDEEVDYFPSRY-DPTRHAERYPIPSDVITGRREK 365
            VG L LN+N  N+FAE E  AF P  +VPG+  S D+MLQ R+FAY D  R+R+G N+  LPVNAP+ P  +   DG M F  +     +Y P+ Y D  + A +Y  P+  ++G  ++
Sbjct:  293 VGELELNRNPLNYFAEVEQAAFGPSNMVPGVGLSPDRMLQGRVFAYADAHRYRVGTNHQQLPVNAPRSPVNSYQRDGSMAFGSNGGAAPNYEPNSYADAPKQAPQYAEPALALSGAADR 411          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_BACFR (Catalase OS=Bacteroides fragilis GN=katA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.176e-18
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFM 251
            VG L LN+N +N+FAE E  AFNP  +V GI +S DKMLQ R+F+YGD QR+RLG N   +PVN P+CP    H DG M
Sbjct:  292 VGILELNRNPENYFAEVEQSAFNPMNIVEGIGFSPDKMLQGRLFSYGDAQRYRLGVNSEQIPVNKPRCPFHAFHRDGAM 370          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATE_RHIME (Catalase C OS=Rhizobium meliloti GN=katE PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.843e-18
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 3
Query:    9 RPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLG-PNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRY 299
            +PVGRLVL++  +NFFAE E +AF    V PGI +S+D +LQ R F+Y DTQ  RLG PN+  LP+NAPKCP ++   DG M   +    V+Y P+ +
Sbjct:  328 KPVGRLVLDRMPENFFAETEQVAFMTQNVPPGIDFSDDPLLQGRNFSYLDTQLKRLGSPNFTHLPINAPKCPFQHFQQDGHMAMRNPVGRVNYQPNSW 425          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATE_MYCAV (Catalase HPII OS=Mycobacterium avium GN=katE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.843e-18
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRL-GPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYF 287
            PVG++VLN+N DNFFAE E +AF+   VVPGI ++ND +LQ R F+Y DTQ  RL GPN+  LPVN P    R N +DG+           YF
Sbjct:  319 PVGKMVLNRNPDNFFAETEQVAFHTANVVPGIDFTNDPLLQFRNFSYLDTQLIRLGGPNFAQLPVNRPVAQVRTNQHDGYAQHAIPQGRSSYF 411          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_PIG (Catalase OS=Sus scrofa GN=CAT PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 2.843e-18
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAP-KCPHRNNHYDGFMNFM-HRDEEVDYFPSRY 299
            PVG+LVLN+N  N+FAE E +AF+P  + PGI  S DKMLQ R+F Y DT RHRLG NYL +PVN P +    N   DG M F  ++    +Y+P+ +
Sbjct:  312 PVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFGYPDTHRHRLGANYLQIPVNCPFRARVANYQRDGPMCFQDNQGGAPNYYPNSF 409          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_STAXY (Catalase A OS=Staphylococcus xylosus GN=katA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.713e-18
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSRYDPTRHAERYPIPSDVITGRREKACI--EKENNFKQPGERY 413
            VG   LN+N +N+F + E  AF P  +VPG+ +S DKMLQ R+F+YGDTQR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+         +Y  P+  I G+  +     + +N F+QPG+ +
Sbjct:  291 VGEFELNRNPENYFQDVEQAAFAPTNIVPGLDFSPDKMLQGRLFSYGDTQRYRLGVNHWQIPVNQPKGVGMENICPFSR---DGHMRILDNNQGASTHYYPNSNGAFEDQPQYKKPALDIQGQAYEYDFREDDDNYFEQPGKLF 431          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_VIBPA (Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.333e-18
Identity = 51/136 (37.50%), Postives = 72/136 (52.94%), Query Frame = 3
Query:    9 RPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMH-RDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            R VG + LN+  +NFF E E  AF P  ++PGI  S D++LQ R+FAY DTQ +RLG N   LPVN P     N++ +G  N     + +V+Y PSR        ++      + G  ++  I K  +F Q G  Y
Sbjct:  306 RKVGTMTLNRLPENFFLETEQSAFAPSNLIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNRPLTSVNNHNQNGLSNNAQLSNGDVNYEPSRKLNLAEDNQFKAVETKLVGTVQQKAISKPRDFYQAGVLY 441          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_STAAW (Catalase OS=Staphylococcus aureus (strain MW2) GN=katA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.333e-18
Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VG   LN+N DN+F + E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +
Sbjct:  294 VGEFELNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLF 434          
The following BLAST results are available for this feature:
BLAST of CK740218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CATA_BRUSU1.276e-1853.75Catalase OS=Brucella suis GN=katA PE=3 SV=3[more]
CATA_STAEP2.176e-1837.93Catalase OS=Staphylococcus epidermidis GN=katA PE=... [more]
CATA_ONCVE2.176e-1842.02Catalase OS=Onchocerca volvulus endobacterium GN=c... [more]
CATA_BACFR2.176e-1856.96Catalase OS=Bacteroides fragilis GN=katA PE=1 SV=1[more]
CATE_RHIME2.843e-1848.98Catalase C OS=Rhizobium meliloti GN=katE PE=2 SV=2[more]
CATE_MYCAV2.843e-1850.54Catalase HPII OS=Mycobacterium avium GN=katE PE=3 ... [more]
CATA_PIG2.843e-1850.00Catalase OS=Sus scrofa GN=CAT PE=1 SV=4[more]
CATA_STAXY3.713e-1836.81Catalase A OS=Staphylococcus xylosus GN=katA PE=3 ... [more]
CATA_VIBPA6.333e-1837.50Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=... [more]
CATA_STAAW6.333e-1836.55Catalase OS=Staphylococcus aureus (strain MW2) GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6713 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740218 ID=CK740218; Name=CK740218; organism=Citrus sinensis; type=EST; length=413bp
CCTCGTGCCGGCCAGTTGGACGCTTGGTCTTGAACAAGAACATCGATAAT
TTCTTTGCGGAAAATGAAATGCTTGCATTTAACCCTGGTATCGTGGTTCC
TGGGATCTACTACTCAAATGATAAGATGCTCCAATGTCGAATCTTTGCCT
ATGGTGATACCCAGAGGCATCGCCTTGGACCCAACTACTTGATGCTTCCA
GTTAATGCACCCAAATGTCCTCATCGCAACAATCATTATGATGGTTTCAT
GAATTTCATGCACAGGGATGAGGAGGTCGATTACTTTCCTTCGAGGTATG
ATCCTACTCGTCATGCTGAGAGATATCCCATTCCTTCTGATGTAATTACA
GGAAGGCGTGAGAAGGCTTGCATTGAGAAGGAAAACAACTTCAAGCAGCC
TGGAGAGAGATAC
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