CK740227

Overview
NameCK740227
Unique NameCK740227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: E4PD_SHEDO (D-erythrose-4-phosphate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=epd PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.770e-11
Identity = 32/85 (37.65%), Postives = 42/85 (49.41%), Query Frame = 3
Query:   18 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAK 272
            T V GVN      +  ++SNASCTTNC+ P + VLD  FG+I G +TT HS   DQ                  +I+P  T  A+
Sbjct:  132 TIVYGVNHHLLAAEHTVVSNASCTTNCIVPVIDVLDSHFGVISGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLAR 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: E4PD_PROMH (D-erythrose-4-phosphate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=epd PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.770e-11
Identity = 33/84 (39.29%), Postives = 42/84 (50.00%), Query Frame = 3
Query:   18 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAA 269
            T V GVN    K    I+SNASCTTNC+ P +K++D  FGI  GT+TT H+   DQ                  +I+P  T  A
Sbjct:  133 TVVFGVNQHELKKQHRIVSNASCTTNCIIPIIKMMDDAFGIESGTVTTIHAAMNDQPVIDAYHKDLRRTRAAGQSIIPVDTKLA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: E4PD_PECCP (D-erythrose-4-phosphate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=epd PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.770e-11
Identity = 33/81 (40.74%), Postives = 42/81 (51.85%), Query Frame = 3
Query:   18 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTST 260
            T V GVN    + +  I+SNASCTTNC+ P +K+LD  FGI  GT+TT HS   DQ                  +I+P  T
Sbjct:  133 TVVFGVNHQQLEREHRIVSNASCTTNCIIPVIKLLDDAFGIENGTVTTIHSSMNDQPVIDAYHHDLRRTRAASQSIIPVDT 213          
The following BLAST results are available for this feature:
BLAST of CK740227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
E4PD_SHEDO9.770e-1137.65D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_PROMH9.770e-1139.29D-erythrose-4-phosphate dehydrogenase OS=Proteus m... [more]
E4PD_PECCP9.770e-1140.74D-erythrose-4-phosphate dehydrogenase OS=Pectobact... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6722 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740227 ID=CK740227; Name=CK740227; organism=Citrus sinensis; type=EST; length=275bp
GCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTAC
AAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCT
TGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAA
CCATGACCACCACACACTCGTACACTGGCGACCAAAGACTACTCGATGCT
AGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCC
AACATCAACTGGCGCGGCAAAAGCT
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