CK740227

Overview
NameCK740227
Unique NameCK740227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.838e-18
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   18 TYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T V+GVN + Y P E  IISNASCTTNCLAP VKVL++ FG+ KG M T H+YT DQ                  NIVPT+TGAAKA
Sbjct:  129 TVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.838e-18
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    6 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            G+ P +VVGVN   YK D  I+SNASCTTNCLAP  KVL+ KFGI++G MTT HS T   +                  NI+P+STGAAKA
Sbjct:  127 GNAPMFVVGVNEKEYKKDIDIVSNASCTTNCLAPLAKVLNDKFGIVEGLMTTVHSITATRKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 217          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.318e-18
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN  +Y+PD  ++SNASCTTNCLAP  KV+   FGI +G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  127 DAPMFVMGVNEKSYRPDISVLSNASCTTNCLAPLAKVIHDNFGIAEGLMTTIHSYTATQKTVDGPSHKDWRGGRTAAQNIIPSSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.318e-18
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FG+++G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVMGVNNETYKSDIKVLSNASCTTNCLAPLAKVVNDNFGLVEGLMTTVHSYTATQKTVDGPSSKDWRGGRTAAQNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.318e-18
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FG+++G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVMGVNNETYKSDIKVLSNASCTTNCLAPLAKVVNDNFGLVEGLMTTVHSYTATQKTVDGPSSKDWRGGRAAAQNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.318e-18
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   18 TYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            T V+GVN + Y   +  ++SNASCTTNCLAPF KVL++KFG+ +G MTT HSYT DQ                  N++PTSTGAAKA
Sbjct:  128 TVVMGVNHEQYDAANHNVVSNASCTTNCLAPFAKVLNEKFGVKRGMMTTIHSYTNDQQILDLPHKDLRRARAAAENMIPTSTGAAKA 214          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN ++Y  D  +ISNASCTTNCLAP  KV+D +FGI++G MTT H+ T  Q                   NI+P STGAAKA
Sbjct:  125 DAPMFVVGVNLESYSSDMQVISNASCTTNCLAPLAKVIDDEFGIVEGLMTTVHATTATQKTVDGPSGKDWRAGRGAGANIIPASTGAAKA 214          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 46/90 (51.11%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P YV+GVN   Y     +ISNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMYVMGVNEKTYDGKAAVISNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHSYTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 47/88 (53.41%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   15 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            P +VVGVN D Y PD  IISNASCTTNCLAP  K+++ KFGI +G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  128 PMFVVGVNEDKYTPDLNIISNASCTTNCLAPLAKIINNKFGIEEGLMTTVHSITATQKTVDGPSHKDWRSGPTASGNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-18
Identity = 47/90 (52.22%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +VVGVN   Y PD  I+SNASCTTNCLAP  KV++ KFGI +G MTT HS T  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVVGVNEQKYTPDLKIVSNASCTTNCLAPLAKVINDKFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKA 215          
The following BLAST results are available for this feature:
BLAST of CK740227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
G3P_AQUAE4.838e-1855.17Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3PC_PETCR4.838e-1851.65Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PARBA6.318e-1850.00Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_COCP76.318e-1848.89Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM6.318e-1848.89Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_BACCE6.318e-1851.72Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_RHIMI8.252e-1850.00Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_PODAN8.252e-1851.11Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_PICCI8.252e-1853.41Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_DEBHA8.252e-1852.22Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6722 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740227 ID=CK740227; Name=CK740227; organism=Citrus sinensis; type=EST; length=275bp
GCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTAC
AAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCT
TGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAA
CCATGACCACCACACACTCGTACACTGGCGACCAAAGACTACTCGATGCT
AGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCC
AACATCAACTGGCGCGGCAAAAGCT
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