CK740227

Overview
NameCK740227
Unique NameCK740227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.986e-17
Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 3
Query:    3 KGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            KGDIPT+V+GVN   + P++  +ISNASCTTNCLAP  KVL   FGI +G MTT H+ T  Q                   NI+P STGAAKA
Sbjct:  123 KGDIPTFVMGVNHKTFNPEKDFVISNASCTTNCLAPIAKVLLDNFGITEGLMTTVHAATATQLVVDGPSKKDWRGGRGCLQNIIPASTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.986e-17
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 KGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            K D P +V+GVN   YK  E I+SNASCTTNCLAP  KVL+ KFGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  124 KDDTPMFVMGVNHTTYK-GEAIVSNASCTTNCLAPLAKVLNDKFGIVEGLMTTVHATTATQKTVDGPSQKDWRGGRGAAQNIIPSSTGAAKA 214          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.986e-17
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    6 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            GD P +V GVN + Y  D  +ISNASCTTNCLAP  KV++  FGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  125 GDAPMFVCGVNLEKYTSDLKVISNASCTTNCLAPLAKVINDNFGIVEGLMTTVHATTATQKTVDGPSNKDWRGGRGAGANIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.986e-17
Identity = 45/90 (50.00%), Postives = 52/90 (57.78%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P YV GVN D Y P + IISNASCTTNCLA   KV+   FGI++G MTT H+ T  Q                   NI+P+STGAAKA
Sbjct:  125 DAPMYVCGVNLDKYNPKDTIISNASCTTNCLATLAKVIHDNFGIVEGLMTTVHATTATQKTVDGPSHKDWRGGRGVGNNIIPSSTGAAKA 214          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.986e-17
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V GVN DAY PD  ++SNASCTTNCLAP  KV++  F I++G MTT H+ T  Q                   NI+P +TGAAKA
Sbjct:  124 DAPMFVCGVNLDAYSPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKA 213          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.124e-17
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN  +Y  D  +ISNASCTTNCLAP  KV++ +F II+G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  127 DAPMFVMGVNHKSYTTDLEVISNASCTTNCLAPLAKVINDEFTIIEGLMTTIHSYTATQKTVDGPSAKDWRGGRTAAQNIIPSSTGAAKA 216          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.124e-17
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P YV+GVN + Y+    +ISNASCTTNCLAP  K++ + FGI++G MTT H+ T  Q                   NI+P STGAAKA
Sbjct:  126 DAPMYVMGVNEETYESSHDVISNASCTTNCLAPLAKIIHENFGIVEGLMTTVHAITATQKTVDGPSGKDWRAGRSALSNIIPASTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.124e-17
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN   Y P   ++SNASCTTNCLAP  KV++  FG+ +G MTT HSYT  Q                   NI+P+STGAAKA
Sbjct:  126 DAPMFVMGVNEKTYDPSVNVLSNASCTTNCLAPLAKVINDNFGLTEGLMTTIHSYTATQKTVDGPSSKDWRGGRTAAQNIIPSSTGAAKA 215          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.124e-17
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN + Y P    I+SNASCTTNCLAP  KV+ ++FGI++G MTT HSYT  Q                   NI+P STGAAKA
Sbjct:  198 DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKA 288          
BLAST of CK740227 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.124e-17
Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    9 DIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKA 275
            D P +V+GVN   Y P    I+SNASCTTNCLAP  KV+ ++FGI++G MTT HSYT  Q                   NI+P STGAAKA
Sbjct:  185 DAPMFVMGVNEKEYNPSSMKIVSNASCTTNCLAPLAKVIHERFGILEGLMTTVHSYTATQKTVDGPSKKAWRDGRGAHQNIIPASTGAAKA 275          
The following BLAST results are available for this feature:
BLAST of CK740227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
G3P_CHLPN6.986e-1750.54Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3PC_TRYBB6.986e-1751.09Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_RHIRA6.986e-1748.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P2_AGABI6.986e-1750.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P1_DROME6.986e-1747.78Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_ERYGR9.124e-1750.00Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_DICDI9.124e-1746.67Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_AJECA9.124e-1747.78Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3PT_HUMAN9.124e-1749.45Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_BOVIN9.124e-1749.45Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6722 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740227 ID=CK740227; Name=CK740227; organism=Citrus sinensis; type=EST; length=275bp
GCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTAC
AAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCT
TGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAA
CCATGACCACCACACACTCGTACACTGGCGACCAAAGACTACTCGATGCT
AGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCC
AACATCAACTGGCGCGGCAAAAGCT
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