CK740241

Overview
NameCK740241
Unique NameCK740241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10744 contig Csv1_Contig10744:167..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: NIM1_HUMAN (Serine/threonine-protein kinase NIM1 OS=Homo sapiens GN=NIM1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.969e-18
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  100 GNFGVARLLRHKETKELVAVKYIERGR---KIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCHSMQI 420
            GNF   +L  H  TKE VA+K +++ +   K    ++REI +   L HPNIIR  EVV T + L +VMEYA GGELF +I   G+ SE E +  F Q++S V + H  QI
Sbjct:   83 GNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLVMEYAGGGELFGKISTEGKLSEPESKLIFSQIVSAVKHMHENQI 192          
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: AAPK2_CAEEL (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Caenorhabditis elegans GN=aak-2 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.969e-18
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  100 GNFGVARLLRHKETKELVAVKYIERGR----KIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCH 408
            G FG  ++  H+ T+  VAVK + R +     +   + REI N    RHP+IIR  +V+ TP+ + ++ME+ +GGELFD I   GR    E R FFQQ+ISGV+YCH
Sbjct:   96 GTFGKVKVGIHETTQYKVAVKILNRQKIKSLDVVGKIRREIQNLSLFRHPHIIRLYQVISTPSDIFMIMEHVSGGELFDYIVKHGRLKTAEARRFFQQIISGVDYCH 202          
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: CIPKV_ORYSJ (CBL-interacting protein kinase 31 OS=Oryza sativa subsp. japonica GN=CIPK31 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.878e-18
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  100 GNFGVARLLRHKETKELVAVKYIERGR----KIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCHS 411
            G F   R  ++ E  E VA+K +++ +    ++ E + REI   + ++HPN++R  EV+ +   + IV+EY  GGELF+ I   GR  E+E R +FQQLI+ V+YCHS
Sbjct:   29 GTFAKVRFAKNTENDEPVAIKILDKEKVQKHRLVEQIRREICTMKLVKHPNVVRLFEVMGSKARIFIVLEYVTGGELFEIIATNGRLKEEEARKYFQQLINAVDYCHS 136          
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: NIM1_MOUSE (Serine/threonine-protein kinase NIM1 OS=Mus musculus GN=Nim1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.064e-18
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  100 GNFGVARLLRHKETKELVAVKYIERGR---KIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCHSMQI 420
            GNF   +L  H  TKE VA+K +++ +   K    ++REI +   L HPNI+R  EVV T + L +VMEYA GGELF +I   G+ SE E +  F Q++S V + H  QI
Sbjct:   83 GNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIVRLYEVVETLSKLHLVMEYAGGGELFGKISTEGKLSEPESKLIFSQILSAVKHMHENQI 192          
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: CIPKO_ARATH (CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.638e-18
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   49 RKLKRWRNMNW*RIWEPGNFGVARLLRHKETKELVAVKY-----IERGRKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCH 408
            +K++R       R    G F   +  R+ +T + VA+K      I + R +D+ + REI   + +RHPNI+R  EV+ +P+ + IV+E+  GGELFDRI + GR  E E R +FQQL+  V +CH
Sbjct:    3 KKMRRVGKYEVGRTIGEGTFAKVKFARNTDTGDNVAIKIMAKSTILKNRMVDQ-IKREISIMKIVRHPNIVRLYEVLASPSKIYIVLEFVTGGELFDRIVHKGRLEESESRKYFQQLVDAVAHCH 126          
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: CIPK9_ARATH (CBL-interacting serine/threonine-protein kinase 9 OS=Arabidopsis thaliana GN=CIPK9 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.638e-18
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  100 GNFGVARLLRHKETKELVAVKYIERGR----KIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCHS 411
            G+F   +  ++  T +  A+K ++R +    K+ E + REI   + ++HPN++   EV+ + T + IV+E   GGELFD+I   GR  EDE R +FQQLI+ V+YCHS
Sbjct:   28 GSFAKVKYAKNTVTGDQAAIKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIVLELVNGGELFDKIAQQGRLKEDEARRYFQQLINAVDYCHS 135          
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: CIPK8_ORYSJ (CBL-interacting protein kinase 8 OS=Oryza sativa subsp. japonica GN=CIPK8 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.638e-18
Identity = 42/108 (38.89%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  100 GNFGVARLLRHKETKELVAVKYIERG----RKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCHS 411
            G F   +  ++ E+ E VA+K ++R      K+ + + REI   + +RHPN++R  EV+ +   + I++E+  GGELFD+I   GR +E + R +FQQLI GV++CHS
Sbjct:   22 GTFAKVKFAQNTESGESVAMKVVDRSSILKHKMADQIKREISIMKLVRHPNVVRLHEVLASRKKIFIILEFITGGELFDKIIRHGRLNEADARRYFQQLIDGVDFCHS 129          
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: SIK1_MOUSE (Serine/threonine-protein kinase SIK1 OS=Mus musculus GN=Sik1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  100 GNFGVARLLRHKETKELVAVKYIERGRKIDEN---VAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCHSMQI 420
            GNF V +L RH+ TK  VA+K I++ R    N   + RE+   + L HPNII+  +V+ T   L IV E+A  GE+FD + + G  SE+E R  F Q++S V YCH+  I
Sbjct:   36 GNFAVVKLARHRVTKTQVAIKIIDKTRLDSSNLEKIYREVQLMKLLNHPNIIKLYQVMETKDMLYIVTEFAKNGEMFDYLTSNGHLSENEARQKFWQILSAVEYCHNHHI 145          
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: CIPKC_ORYSJ (CBL-interacting protein kinase 12 OS=Oryza sativa subsp. japonica GN=CIPK12 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   85 RIWEPGNFGVARLLRHKETKELVAVKYIERGRKIDEN----VAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCHS 411
            R+   G+F      RH ET E VA+K +++ + +       V REI   R +RHPNI++  EV+ + T +  VMEY  GGELF R+ + GR  ED  R +FQQL+S V++CH+
Sbjct:   50 RVLGQGSFAKVYQARHLETDECVAIKVLDKEKAVKGGMVHLVKREINVLRRVRHPNIVQLFEVMASKTKIYFVMEYVRGGELFSRV-SKGRLREDTARRYFQQLVSAVDFCHA 161          
BLAST of CK740241 vs. ExPASy Swiss-Prot
Match: SIK2_MOUSE (Serine/threonine-protein kinase SIK2 OS=Mus musculus GN=Sik2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.924e-17
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  100 GNFGVARLLRHKETKELVAVKYIERGRKID----ENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICNAGRFSEDEGRYFFQQLISGVNYCHSMQI 420
            GNF V +L RH+ TK  VA+K I++ + +D    E + RE+   + L HP+II+  +V+ T + L +V EYA  GE+FD + N GR +E E R  F Q++S V+YCH  ++
Sbjct:   29 GNFAVVKLGRHRTTKTEVAIKIIDKSQ-LDAVNLEKIYREVQIMKMLDHPHIIKLYQVMETKSMLYLVTEYAKNGEIFDYLANHGRLNESEARRKFWQILSAVDYCHGRKV 138          
The following BLAST results are available for this feature:
BLAST of CK740241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
NIM1_HUMAN2.969e-1844.55Serine/threonine-protein kinase NIM1 OS=Homo sapie... [more]
AAPK2_CAEEL2.969e-1843.935'-AMP-activated protein kinase catalytic subunit ... [more]
CIPKV_ORYSJ3.878e-1839.81CBL-interacting protein kinase 31 OS=Oryza sativa ... [more]
NIM1_MOUSE5.064e-1843.64Serine/threonine-protein kinase NIM1 OS=Mus muscul... [more]
CIPKO_ARATH8.638e-1838.40CBL-interacting serine/threonine-protein kinase 24... [more]
CIPK9_ARATH8.638e-1839.81CBL-interacting serine/threonine-protein kinase 9 ... [more]
CIPK8_ORYSJ8.638e-1838.89CBL-interacting protein kinase 8 OS=Oryza sativa s... [more]
SIK1_MOUSE1.473e-1742.73Serine/threonine-protein kinase SIK1 OS=Mus muscul... [more]
CIPKC_ORYSJ1.473e-1741.59CBL-interacting protein kinase 12 OS=Oryza sativa ... [more]
SIK2_MOUSE1.924e-1741.44Serine/threonine-protein kinase SIK2 OS=Mus muscul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6736 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740241 ID=CK740241; Name=CK740241; organism=Citrus sinensis; type=EST; length=428bp
GGTTGCTCATCAAAGAGAAGATTCAAGAAATTGAATTGGGGTGTTAGAAG
AAAATTAAAAAGATGGAGAAATATGAATTGGTGAAGGATTTGGGAGCCTG
GGAATTTTGGTGTGGCAAGGCTTTTGAGACACAAAGAAACCAAAGAGCTT
GTTGCCGTGAAATACATTGAAAGAGGCCGCAAGATAGACGAGAATGTGGC
TAGAGAGATTATAAATCACAGGTCCCTTAGGCACCCAAATATTATCCGGT
TCAAGGAGGTGGTTTTGACTCCCACTCATTTGGCAATTGTTATGGAATAT
GCTGCCGGCGGAGAGCTGTTTGATCGAATCTGCAATGCCGGTAGATTCAG
TGAAGATGAGGGTAGATATTTTTTCCAGCAGCTGATCTCGGGCGTCAATT
ATTGCCATTCCATGCAAATATGCCCTAG
back to top