CK740242

Overview
NameCK740242
Unique NameCK740242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1445 contig Csv1_Contig1445:1..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_SCHPO (Probable small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe GN=smg1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = 3 
Query:   93 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGNSVVTVEALEPVS 323
            MS++G P DLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E  V+G EK  IG V IRGNSV+ +E L+ ++
Sbjct:    1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLDKMT 77
The following BLAST results are available for this feature:
BLAST of CK740242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RUXG_SCHPO3.747e-1346.84Probable small nuclear ribonucleoprotein G OS=Schi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6737 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740242 ID=CK740242; Name=CK740242; organism=Citrus sinensis; type=EST; length=521bp
AAACCCTCTTTTCACAATTATCGCTCGCTGCAGCTCACTCGCTTTGCTTT
CTTCCGTGCTTTTTCTCTGAAACGATCCGCTAGGCTTCGACAATGAGCAG
ATCAGGCCAGCCTCCGGATCTCAAGAAGTACATGGATAAGAAGCTTCAGA
TCAAGCTCAATGCTAATAGGATGATTGTTGGAACACTTCGTGGATTTGAT
CAGTTTATGAATCTTGTGATTGACAACACAGTTGAGGTCAATGGCAATGA
GAAAAATGATATAGGGATGGTGGTTATCAGAGGGAATAGTGTAGTCACTG
TTGAAGCCCTTGAACCGGTAAGCAAATCACAGTGACGTGGTTTGCCACTG
GGGTCGATGTAATGTGCTTTCTGATCTTCTTTGTGTACTATTATGAATAT
TAAGGCTGTTAGTATGCAATGGGAGATGTTTCATGCTGTTGTACCTGAGA
AAATTTAGGCCATTTTCTTTGTAATGCTTATTCTAAGGGAGCTCGTTTGA
ACAGGTAAAAAAAAAAAAAAA
back to top