CK740243

Overview
NameCK740243
Unique NameCK740243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740243 vs. ExPASy Swiss-Prot
Match: S35E2_HUMAN (Solute carrier family 35 member E2 OS=Homo sapiens GN=SLC35E2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.279e-17
Identity = 52/182 (28.57%), Postives = 94/182 (51.65%), Query Frame = 3
Query:    6 MFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCXXXXXXXXXXXMFFRTPVSAINAFGTGIALAGVFLYSR 551
            M LGE+  L V  SLIP+MGG+AL + TE+SFN  GF +A+++N+ +  +NV SKK++   +       L    +  +  +++P  +    V       +S   N ++V +  L   + +H     +Y ++ ++SPVT SV +            + F   +++++A GT +   GV LY++
Sbjct:  189 MILGEYTGLLVNLSLIPVMGGLALCTATEISFNVLGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVAMLVPARVFFTDVPVIGRSGKSFSYN-QDVVLLLLTDGVLFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSVIVFGNKITSLSAVGTALVTVGVLLYNK 369          
BLAST of CK740243 vs. ExPASy Swiss-Prot
Match: S35E1_HUMAN (Solute carrier family 35 member E1 OS=Homo sapiens GN=SLC35E1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 55/173 (31.79%), Postives = 94/173 (54.34%), Query Frame = 3
Query:   45 SLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSL----IAAICYHAYQQVSYMILQRVSPVTHSVGNCXXXXXXXXXXXMFFRTPVSAINAFGTGIALAGVFLYSR 551
            SLIPI+ GV LA+VTE+SF+  G  SA+A+ L    +N+ SKKV+  ++  + ++ L +I+   +   MIP  ++++      A+L S+ L     +  +L    ++  C  A   +++ IL  VSP+++SV N            +  R PV++ N  G   A+ GVFLY++
Sbjct:  168 SLIPIISGVLLATVTELSFDMWGLVSALAATLCFSLQNIFSKKVL--RDSRIHHLRLLNILGCHAVFFMIPTWVLVD----LSAFLVSSDLTYVYQWPWTLLLLAVSGFCNFAQNVIAFSILNLVSPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYNK 334          
BLAST of CK740243 vs. ExPASy Swiss-Prot
Match: S35E1_RAT (Solute carrier family 35 member E1 OS=Rattus norvegicus GN=Slc35e1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 50/169 (29.59%), Postives = 91/169 (53.85%), Query Frame = 3
Query:   45 SLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCXXXXXXXXXXXMFFRTPVSAINAFGTGIALAGVFLYSR 551
            SL+PI+ GV LA+VTE+SF+  G  SA+A+ L    +N+ SKKV+  ++  + ++ L +I+   +   MIP  ++++  TF  +   +         +  +++  C  A   +++ IL  +SP+++SV N            +  R PV++ N  G   A+ GVFLY++
Sbjct:  168 SLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIFSKKVL--RDSRIHHLRLLNILGCHAVFFMIPTWVLVDLSTFLVSSDLAYVSQWPWTLLLLVVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVIAVSLIMLRNPVTSTNVLGMMTAILGVFLYNK 334          
BLAST of CK740243 vs. ExPASy Swiss-Prot
Match: S35E1_MOUSE (Solute carrier family 35 member E1 OS=Mus musculus GN=Slc35e1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 54/173 (31.21%), Postives = 94/173 (54.34%), Query Frame = 3
Query:   45 SLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSL----IAAICYHAYQQVSYMILQRVSPVTHSVGNCXXXXXXXXXXXMFFRTPVSAINAFGTGIALAGVFLYSR 551
            SL+PI+ GV LA+VTE+SF+  G  SA+A+ L    +N+ SKKV+  ++  + ++ L +I+   +   MIP  ++++  TF    L S+ L     +  +L    ++  C  A   +++ IL  +SP+++SV N            +  R PV++ N  G   A+ GVFLY++
Sbjct:  168 SLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIFSKKVL--RDSRIHHLRLLNILGCHAVFFMIPTWVLVDLSTF----LVSSDLAYVSQWPWTLLLLAVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYNK 334          
BLAST of CK740243 vs. ExPASy Swiss-Prot
Match: S35E2_MOUSE (Solute carrier family 35 member E2 OS=Mus musculus GN=Slc35e2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 51/182 (28.02%), Postives = 92/182 (50.55%), Query Frame = 3
Query:    6 MFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCXXXXXXXXXXXMFFRTPVSAINAFGTGIALAGVFLYSR 551
            M LGE+  L V  SLIP+MGG+AL + TE+SFN  GF +A+++N+ +  +NV SKK++   +       L    +  +  L+IP       +       +S   + +++ +  L     +H     +Y ++ ++SPVT SV +            + F   +++++A GT +   GV LY++
Sbjct:  189 MILGEYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVALLIPAWTFFMDIPVIGRSGKSFSYS-QDIVLLLLTDGALFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSIIVFGNKITSLSAIGTILVTLGVLLYNK 369          
BLAST of CK740243 vs. ExPASy Swiss-Prot
Match: S35E1_DROME (Solute carrier family 35 member E1 homolog OS=Drosophila melanogaster GN=CG14621 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 51/183 (27.87%), Postives = 93/183 (50.82%), Query Frame = 3
Query:    6 MFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQ-VSYMILQRVSPVTHSVGNCXXXXXXXXXXXMFFRTPVSAINAFGTGIALAGVFLYSR 551
            +F GE     V  SL+PI+ GV +A+VTE+SF+  G  SA+ S +    +N+ SKKV+  K+  + ++ L  ++  +S  + +P+ L M+       +  +A  NL    +  L A    +  Q  +++ +L  V+P+T++V +            +    PV+ +N  G  +A+ GV  Y+R
Sbjct:  124 VFFGEKQPTLVYLSLLPIITGVGIATVTEISFDMMGLISALISTMGFSMQNIFSKKVL--KDTNIHHLRLLHLLGKLSLFIFLPLWLYMDSFA---VFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVLCYNR 301          
The following BLAST results are available for this feature:
BLAST of CK740243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
S35E2_HUMAN1.279e-1728.57Solute carrier family 35 member E2 OS=Homo sapiens... [more]
S35E1_HUMAN6.345e-1731.79Solute carrier family 35 member E1 OS=Homo sapiens... [more]
S35E1_RAT1.846e-1629.59Solute carrier family 35 member E1 OS=Rattus norve... [more]
S35E1_MOUSE1.846e-1631.21Solute carrier family 35 member E1 OS=Mus musculus... [more]
S35E2_MOUSE9.162e-1628.02Solute carrier family 35 member E2 OS=Mus musculus... [more]
S35E1_DROME2.947e-1427.87Solute carrier family 35 member E1 homolog OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6738 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740243 ID=CK740243; Name=CK740243; organism=Citrus sinensis; type=EST; length=551bp
CTGCTATGTTTCTAGGGGAGTTCCCCACTCTCTGGGTTGTTGGATCTCTA
ATACCTATTATGGGTGGTGTTGCGCTTGCGTCAGTTACTGAGGTTTCTTT
TAATTGGGCTGGTTTCTGGAGTGCAATGGCTTCCAATTTGACAAACCAAT
CTCGTAATGTCCTTAGCAAAAAAGTCATGGTGAATAAAGAGGAAGCTTTG
GACAATATCACCCTGTTTTCTATAATAACAGTCATGTCTTTCATCCTGAT
GATCCCCGTGACTCTCATTATGGAAGGTGTCACGTTTACCCCTGCATACC
TACAGTCTGCTGGTTTGAATCTTAAAGAGGTTTATGTAAGGTCACTTATC
GCTGCAATCTGTTACCATGCTTATCAGCAGGTCTCTTATATGATATTACA
GAGGGTAAGCCCTGTTACCCATTCAGTAGGCAATTGTGTGAAGAGGGTGG
TGGTCATCGTGAGCTCTGTTATGTTCTTCCGAACTCCAGTCTCAGCTATC
AATGCCTTTGGCACTGGGATTGCTCTTGCTGGAGTTTTCCTGTACTCAAG
G
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