CK740244

Overview
NameCK740244
Unique NameCK740244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:360..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMC (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C GN=gpxA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 56/128 (43.75%), Postives = 71/128 (55.47%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDKEGNVVEPLCPHH*PSE 337
            Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV+++G VVE   P   P E
Sbjct:   41 YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEE 168          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMB (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup B GN=gpxA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 56/128 (43.75%), Postives = 71/128 (55.47%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDKEGNVVEPLCPHH*PSE 337
            Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV+++G VVE   P   P E
Sbjct:   41 YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEE 168          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMA (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup A GN=gpxA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 56/128 (43.75%), Postives = 71/128 (55.47%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDKEGNVVEPLCPHH*PSE 337
            Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV+++G VVE   P   P E
Sbjct:   41 YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEE 168          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX1_YEAST (Glutathione peroxidase 1 OS=Saccharomyces cerevisiae GN=GPX1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.304e-20
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVE 307
            Y EL  LY+KYK+ GL I+AFPC QFG QE   +++I +F   ++   FPI  K+  NG    P+YK LK+S  G  G   IKWNF KF+VD+ G VV+
Sbjct:   42 YKELEYLYEKYKSHGLVIVAFPCGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSGKSGIKMIKWNFEKFVVDRNGKVVK 140          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX_ENCCU (Probable phospholipid hydroperoxide glutathione peroxidase OS=Encephalitozoon cuniculi GN=ECU02_0440 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.493e-19
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG--GLFGDSIKWNFSKFLVDKEGNVVEPLCP 319
            SNY   + L DK+  +GL IL FPCNQ+  QE    E+I+     ++   F +FDKVDV G  A P+++HL ++K   G  G+ IKWNF+KFLVD++G VV+   P
Sbjct:   47 SNYKSFAGLLDKFYRKGLRILLFPCNQYLGQESRPIEEIRGEVSKKYSDRFVVFDKVDVFGKGAHPVFRHLVNTKNGKGRLGNFIKWNFTKFLVDRKGCVVKRFGP 152          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX1_CHLRE (Glutathione peroxidase 1, mitochondrial OS=Chlamydomonas reinhardtii GN=GPX PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.412e-19
Identity = 52/108 (48.15%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR--FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCP 319
            T +NY E + L  KY    L I+AFPCNQFG QEPG N +I+ FA  R    A   + DKVDVNG NA+P+Y  LK + G      I WNF KFLV  +G V     P
Sbjct:   78 TAANYKEFATLLGKYPATDLTIVAFPCNQFGGQEPGTNAEIKAFASARGFSGAGALLMDKVDVNGANASPVYNFLKVAAGDT--SDIGWNFGKFLVRPDGTVFGRYAP 183          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.312e-17
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHL--------------------KSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCPHH*PSE 337
            Y +L  +   + ++G  +L FPCNQF  QEPG +E+I+ +  T +   FP+F K++VNG+   PLY+ L                       +  L+ D I WNF KFLV ++G V++   P   P +
Sbjct:   43 YEQLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSPDMTPED 170          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX7_MOUSE (Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.937e-17
Identity = 43/101 (42.57%), Postives = 55/101 (54.46%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV 304
            T+ NY  L QL          +LAFPCNQFG QEP  N +I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LVD +G VV
Sbjct:   59 TDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTS----GKEPTWNFWKYLVDPDGKVV 155          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX8B_XENLA (Probable glutathione peroxidase 8-B OS=Xenopus laevis GN=gpx8-B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE 307
            T +NY  L +L+ ++      +LAFPCNQFG  EPG N++I+  A   +   FP+F K+ + G  A P Y+ L  S         +WNF K+LVD +G VV+
Sbjct:   82 TEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNKEIEAMAKRNYGVTFPVFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVDPQGQVVK 179          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX7_HUMAN (Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV 304
            T+ +Y  L QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LV  +G VV
Sbjct:   60 TDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----GKEPTWNFWKYLVAPDGKVV 156          
The following BLAST results are available for this feature:
BLAST of CK740244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GPXA_NEIMC4.643e-2143.75Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMB4.643e-2143.75Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMA4.643e-2143.75Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPX1_YEAST2.304e-2048.48Glutathione peroxidase 1 OS=Saccharomyces cerevisi... [more]
GPX_ENCCU1.493e-1945.28Probable phospholipid hydroperoxide glutathione pe... [more]
GPX1_CHLRE7.412e-1948.15Glutathione peroxidase 1, mitochondrial OS=Chlamyd... [more]
BTUE_ECOLI5.312e-1732.81Vitamin B12 transport periplasmic protein btuE OS=... [more]
GPX7_MOUSE6.937e-1742.57Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 P... [more]
GPX8B_XENLA2.018e-1639.22Probable glutathione peroxidase 8-B OS=Xenopus lae... [more]
GPX7_HUMAN1.308e-1540.59Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6739 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740244 ID=CK740244; Name=CK740244; organism=Citrus sinensis; type=EST; length=396bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGT
TGTTGAGCCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGAT
ATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCAT
back to top