CK740244

Overview
NameCK740244
Unique NameCK740244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX7_BOVIN (Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV 304
            T+ +Y  L QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LV  +G V+
Sbjct:   59 TDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTETS----GKEPTWNFWKYLVAPDGKVI 155          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX8A_XENLA (Probable glutathione peroxidase 8-A OS=Xenopus laevis GN=gpx8-A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE 307
            +NY  L +L+ ++      +LAFPCNQFG  EPG N++I   A   +   FP+F K+ + G  A P Y+ L  S         +WNF K+LVD +G VV+
Sbjct:   84 ANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNQEIGALAKRNYGVTFPMFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVDPQGQVVK 179          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX8_BOVIN (Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.481e-15
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCP 319
            T+ NY  L +L+ ++      +LAFPCNQFG  EP  ++++  FA   F   FPIF K+ + G  A P ++ L  S         +WNF K+LV+ EG VV+   P
Sbjct:   82 TDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKTWRP 183          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI---QEFAC--TRFKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEG 295
            + Y EL+ L ++ KN G+ +LAFPCNQFG QEPG N +I    ++ C  + F   F +F+K DVNG+    ++  LK+S      L G S            I+WNF KFLV  +G
Sbjct:   77 AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX8_HUMAN (Probable glutathione peroxidase 8 OS=Homo sapiens GN=GPX8 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE 307
            T+ NY  L +L+ ++      +LAFPCNQFG  EP  +++++ FA   +   FPIF K+ + G    P ++ L  S         +WNF K+LV+ EG VV+
Sbjct:   82 TDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVK 179          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX8_MOUSE (Probable glutathione peroxidase 8 OS=Mus musculus GN=Gpx8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.209e-14
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE 307
            T+ +Y  L +L+ ++      +LAFPCNQFG  EP  +++++ FA   +   FPIF K+ + G  A P ++ +  S         +WNF K+LV+ EG VV+
Sbjct:   82 TDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEPKSSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFIVDSS----KKEPRWNFWKYLVNPEGQVVK 179          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX3_CAEEL (Glutathione peroxidase OS=Caenorhabditis elegans GN=C11E4.2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.376e-14
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK--------AEFPIFDKVDVNGDNAAPLYKHLKSS------KGGLFGD---------SIKWNFSKFLVDKEG 295
            YT+ + + +KY+ QGL ++AFPCNQF  QEP +N ++     T  +         E  I+ K+DVNGDN  PLY+ +K S      K G   +          I WNF KFL+D+ G
Sbjct:   79 YTDFNPMLEKYQAQGLTLVAFPCNQFYLQEPAENHELMN-GLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESCPQTVDKIGKTDELMYNPVRPSDITWNFEKFLIDRNG 194          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX8_DANRE (Probable glutathione peroxidase 8 OS=Danio rerio GN=gpx8 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV 304
            T  +Y  L +L+ +       +LAFPC+Q+G  E G + +I+ FA + +   FPIF+K+ + G  A P ++ L  S   +     +WNF KFLV  EG VV
Sbjct:   83 TEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTDSVQKI----PRWNFWKFLVSPEGQVV 179          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX8_TETNG (Probable glutathione peroxidase 8 OS=Tetraodon nigroviridis GN=gpx8 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 37/101 (36.63%), Postives = 52/101 (51.49%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV 304
            T SNY  L +L+ +       +LAFPC QFG  E G +   + FA   +   FP F ++ + G  A P ++ L  S   +     +WNF KFLV+ EG VV
Sbjct:   83 TESNYRSLQELHRELGPSHFNVLAFPCAQFGETETGSSRDSEAFAKATYGVTFPFFSRIKIMGSEAEPAFRFLTDSVQKV----PRWNFWKFLVNPEGKVV 179          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 46/114 (40.35%), Postives = 58/114 (50.88%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEG 295
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+          S G LF +      I+WNF KFLV  +G
Sbjct:   79 YLELNALQEELGPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDG 192          
The following BLAST results are available for this feature:
BLAST of CK740244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GPX7_BOVIN1.709e-1539.60Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=... [more]
GPX8A_XENLA2.915e-1539.00Probable glutathione peroxidase 8-A OS=Xenopus lae... [more]
GPX8_BOVIN8.481e-1537.74Probable glutathione peroxidase 8 OS=Bos taurus GN... [more]
GPX6_HUMAN1.447e-1439.66Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]
GPX8_HUMAN1.889e-1436.27Probable glutathione peroxidase 8 OS=Homo sapiens ... [more]
GPX8_MOUSE4.209e-1435.29Probable glutathione peroxidase 8 OS=Mus musculus ... [more]
GPX3_CAEEL9.376e-1437.61Glutathione peroxidase OS=Caenorhabditis elegans G... [more]
GPX8_DANRE1.599e-1336.63Probable glutathione peroxidase 8 OS=Danio rerio G... [more]
GPX8_TETNG1.354e-1236.63Probable glutathione peroxidase 8 OS=Tetraodon nig... [more]
GPX3_RAT1.354e-1240.35Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6739 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740244 ID=CK740244; Name=CK740244; organism=Citrus sinensis; type=EST; length=396bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGT
TGTTGAGCCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGAT
ATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCAT
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