CK740244

Overview
NameCK740244
Unique NameCK740244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEG 295
            Y EL+ L ++    GL++L FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G
Sbjct:   79 YIELNALQEELAPFGLDLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 44/116 (37.93%), Postives = 59/116 (50.86%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFG------------DSIKWNFSKFLVDKEG 295
            + Y EL+ L ++ K  GL +L FPCNQFG QEPGDN++I       R    F   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G
Sbjct:   77 AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX5_HUMAN (Epididymal secretory glutathione peroxidase OS=Homo sapiens GN=GPX5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 44/116 (37.93%), Postives = 59/116 (50.86%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFG------------DSIKWNFSKFLVDKEG 295
            + Y EL+ L ++ K  GL +L FPCNQFG QEPGDN++I       R    F   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G
Sbjct:   77 AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX1_RAT (Glutathione peroxidase 1 OS=Rattus norvegicus GN=Gpx1 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 43/122 (35.25%), Postives = 60/122 (49.18%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEG 295
            T  +YTE++ L  +   +GL +L FPCNQFG QE G NE+I       R    F+  F +F+K +VNG+ A PL+  L+++      D                    I WNF KFLV  +G
Sbjct:   50 TTRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPAPSDDPTALMTDPKYIIWSPVCRNDISWNFEKFLVGPDG 171          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX6_RAT (Glutathione peroxidase 6 OS=Rattus norvegicus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.309e-12
Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEG 295
            + Y EL+ L ++ +   + +L FPCNQFG QEPG N +I       R    F   F +F+K DVNGDN   ++  LKS          S   LF D      I+WNF KFLV  +G
Sbjct:   77 ATYPELNTLQEELRPFNVSVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGFVPNFQLFEKGDVNGDNEQKVFSFLKSSCPPTSELLGSPEHLFWDPMKVHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX6_MOUSE (Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.309e-12
Identity = 44/116 (37.93%), Postives = 59/116 (50.86%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEG 295
            + Y EL+ L ++ K   + +L FPCNQFG QEPG N +I       R    +   F +F+K DVNGDN   ++  LK+S      LFG              I+WNF KFLV  +G
Sbjct:   77 ATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKIHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX3_HYLLA (Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.309e-12
Identity = 46/117 (39.32%), Postives = 58/117 (49.57%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVV 304
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  +
Sbjct:   79 YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGTPI 195          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX3_BOVIN (Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.309e-12
Identity = 45/116 (38.79%), Postives = 58/116 (50.00%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEG 295
            Y EL+ L ++ +  GL IL FPCNQFG QEPG+N +I   A  +       F   F +F+K DVNG+     Y  LK+S      L G              I+WNF KFLV  +G
Sbjct:   79 YVELNALQEELEPFGLVILGFPCNQFGKQEPGENSEI--LATLKYVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPDRLFWEPMKVHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX3_PONPY (Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEG 295
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G
Sbjct:   79 YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX3_HUMAN (Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEG 295
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G
Sbjct:   79 YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG 192          
The following BLAST results are available for this feature:
BLAST of CK740244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GPX3_CEBAP1.354e-1239.47Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]
GPX5_MACFA1.768e-1237.93Epididymal secretory glutathione peroxidase OS=Mac... [more]
GPX5_HUMAN1.768e-1237.93Epididymal secretory glutathione peroxidase OS=Hom... [more]
GPX1_RAT1.768e-1235.25Glutathione peroxidase 1 OS=Rattus norvegicus GN=G... [more]
GPX6_RAT2.309e-1238.79Glutathione peroxidase 6 OS=Rattus norvegicus GN=G... [more]
GPX6_MOUSE2.309e-1237.93Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 P... [more]
GPX3_HYLLA2.309e-1239.32Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 ... [more]
GPX3_BOVIN2.309e-1238.79Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=... [more]
GPX3_PONPY3.016e-1240.35Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3... [more]
GPX3_HUMAN3.016e-1240.35Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6739 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740244 ID=CK740244; Name=CK740244; organism=Citrus sinensis; type=EST; length=396bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGT
TGTTGAGCCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGAT
ATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCAT
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