CK740244

Overview
NameCK740244
Unique NameCK740244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX3_MACFU (Glutathione peroxidase 3 OS=Macaca fuscata fuscata GN=GPX3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 45/114 (39.47%), Postives = 57/114 (50.00%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEG 295
            Y EL+ L ++    GL +L FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G
Sbjct:   79 YIELNALQEELAPFGLVLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSK-------------------GGLFGDSIKWNFSKFLVDKEG 295
            T  +YTE++ L  +   +GL +L FPCNQFG QE G NE+I       R    F+  F +F+K +VNG+ A PL+  L+++                      +  + I WNF KFLV  +G
Sbjct:   50 TIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDG 171          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX5_RAT (Epididymal secretory glutathione peroxidase OS=Rattus norvegicus GN=Gpx5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 47/114 (41.23%), Postives = 54/114 (47.37%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS----------KGGLFGDSIK-----WNFSKFLVDKEG 295
            Y EL+ L D  K  GL IL FPCNQFG QEPGDN +I       R    F   F +F K DVNG+    ++  LK S              F + IK     WNF KFLV   G
Sbjct:   79 YPELNALQDDLKQFGLVILGFPCNQFGKQEPGDNTEILPGLKYVRPGKGFLPNFQLFAKGDVNGEKEQEIFTFLKRSCPHPSETVVTSKHTFWEPIKVHDIRWNFEKFLVGPNG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX5_MOUSE (Epididymal secretory glutathione peroxidase OS=Mus musculus GN=Gpx5 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 45/114 (39.47%), Postives = 56/114 (49.12%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN-EQIQEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLK---------------SSKGGLFGDSIKWNFSKFLVDKEG 295
            Y EL+ L +  K  GL IL FPCNQFG QEPGDN E +      R    F   F +F K DVNG+N   ++  LK               +S   +    I+WNF KFLV  +G
Sbjct:   79 YPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHPSETVVMSKHTSWEPIKVHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX5_PIG (Epididymal secretory glutathione peroxidase OS=Sus scrofa GN=GPX5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.955e-11
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEG 295
            + Y EL+ L ++ K  GL +L FPCNQFG QEPG+N +I       R    +   F +F+K DVNG+    ++  LK S      L G              I+WNF KFLV  +G
Sbjct:   75 AQYPELNTLQEELKPFGLVVLGFPCNQFGKQEPGENSEILLGLKYVRPGGGYVPNFQLFEKGDVNGEKEQKVFTFLKHSCPHPSELIGSIGYISWEPIRVHDIRWNFEKFLVGPDG 190          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX3_MOUSE (Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.955e-11
Identity = 45/114 (39.47%), Postives = 57/114 (50.00%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEG 295
            Y EL+ L ++    GL IL FP NQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+          S G LF +      I+WNF KFLV  +G
Sbjct:   79 YLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDG 192          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX2_RAT (Glutathione peroxidase 2 OS=Rattus norvegicus GN=Gpx2 PE=1 SV=3)

HSP 1 Score: 62.003 bits (149), Expect = 5.388e-11
Identity = 40/122 (32.79%), Postives = 57/122 (46.72%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEG 295
            T  +YT+L++L  ++  + L +L FPCNQFG QE   NE+I       R    F+  F +  K DVNG N  P++ +LK      + D                    + WNF KFL+  EG
Sbjct:   43 TTRDYTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRHGGGFQPTFSLTQKCDVNGQNQHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEG 163          

HSP 2 Score: 25.409 bits (54), Expect = 5.388e-11
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  309 RYAPTTSPLSIEKDIKKLLETA 374
            RY+ T   ++IE DIK+LL+ A
Sbjct:  168 RYSRTFQTINIEPDIKRLLKVA 189          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.688e-11
Identity = 42/117 (35.90%), Postives = 57/117 (48.72%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ-------IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS---SKGGLFGD------------SIKWNFSKFLVDKEGN 298
            Y + + + +   N  L+ILAFPCNQF  QEP +N +       ++            IF KV+VNGD+  PLYK LK        + GD             I WNF KFL+DK+G+
Sbjct:   78 YNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHELLNGLKYVRPGNGWEPHGNMHIFGKVEVNGDDHHPLYKFLKEHCPQTVPIIGDRHQLMYNPIGTNDIIWNFEKFLIDKKGH 194          
The following BLAST results are available for this feature:
BLAST of CK740244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GPX3_MACFU3.939e-1239.47Glutathione peroxidase 3 OS=Macaca fuscata fuscata... [more]
GPX1_MOUSE8.776e-1234.43Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]
GPX5_RAT1.146e-1141.23Epididymal secretory glutathione peroxidase OS=Rat... [more]
GPX5_MOUSE1.497e-1139.47Epididymal secretory glutathione peroxidase OS=Mus... [more]
GPX5_PIG1.955e-1137.07Epididymal secretory glutathione peroxidase OS=Sus... [more]
GPX3_MOUSE1.955e-1139.47Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 P... [more]
GPX2_RAT5.388e-1132.79Glutathione peroxidase 2 OS=Rattus norvegicus GN=G... [more]
GPXC_DIRIM5.688e-1135.90Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6739 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740244 ID=CK740244; Name=CK740244; organism=Citrus sinensis; type=EST; length=396bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGT
TGTTGAGCCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGAT
ATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCAT
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