CK740249

Overview
NameCK740249
Unique NameCK740249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_PYRAB (Glutamate dehydrogenase OS=Pyrococcus abyssi GN=gdhA PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 9.548e-41
Identity = 90/199 (45.23%), Postives = 119/199 (59.80%), Query Frame = 2
Query:   83 AIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AIQG+GN G + AK   E +G KVVAVSD  G I NP+G++               DF G   +   +LL  E DVL P A+  V+ K+NA ++KAK + E AN P  PEADEIL +KG++ +PD   N+GGVTVSYFEWVQNI G+ W  E+V  +L + M  AF D+    +  N ++R  A+ + V RV QA L R
Sbjct:  217 AIQGYGNAGYYLAKIMSEDYGMKVVAVSDSKGGIYNPDGLNADEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTLEEVREKLDKKMTKAFYDVYNTAKEKNIHMRDAAYVVAVQRVYQAMLDR 415          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_PYRFU (Glutamate dehydrogenase OS=Pyrococcus furiosus GN=gdhA PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.247e-40
Identity = 90/206 (43.69%), Postives = 120/206 (58.25%), Query Frame = 2
Query:   62 SISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            ++     AIQG+GN G + AK   E  G KVVAVSD  G I NP+G++               DF G   +   +LL  E DVL P A+  V+ K+NA ++KAK + E AN P  PEADEIL +KG++ +PD   N+GGVTVSYFEWVQNI G+ W  E+V   L + M  AF D+  + +  N ++R  A+ + V RV QA L R
Sbjct:  210 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDR 415          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_PYRHO (Glutamate dehydrogenase OS=Pyrococcus horikoshii GN=gdhA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.127e-40
Identity = 89/199 (44.72%), Postives = 118/199 (59.30%), Query Frame = 2
Query:   83 AIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AIQG+GN G + AK   E +G KVVAVSD  G I NP+G++               DF G   +   +LL  + DVL P A+  V+ K+NA ++KAK + E AN P  PEADEIL +KG++ +PD   N+GGVTVSYFEWVQNI G+ W  E+V   L + M  AF D+    +  N ++R  A+ + V RV QA L R
Sbjct:  217 AIQGYGNAGYYLAKIMSEDYGMKVVAVSDSKGGIYNPDGLNADEVLKWKREHGSVKDFPGATNISNEELLELDVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTLEEVRERLDKKMTKAFYDVYNTAKEKNIHMRDAAYVVAVQRVYQAMLDR 415          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_PYREN (Glutamate dehydrogenase OS=Pyrococcus endeavori GN=gdhA PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.738e-40
Identity = 89/199 (44.72%), Postives = 118/199 (59.30%), Query Frame = 2
Query:   83 AIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AIQG+GN G + AK   E +G KVVAVSD  G I NP+G++               DF G   +   +LL  E DVL P A+  V+ K+NA ++KAK + E AN P  PEADEIL +KG++ +PD   N+GGVTVSYFEWVQNI G+ W  E+V  +L + M  AF D+    +  N ++R   + + V RV QA L R
Sbjct:  217 AIQGYGNAGYYLAKIMSEDYGMKVVAVSDSKGGIYNPDGLNADEVLKWKQEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTLEEVREKLDKKMTKAFYDVYNTAKEKNIHMRDADYVVAVQRVYQAMLDR 415          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_SYNY3 (NADP-specific glutamate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=gdhA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.239e-39
Identity = 89/229 (38.86%), Postives = 127/229 (55.46%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAM-DLND--------LLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQA 664
            ATG G F+  + +L +  +   N   A+QGFGN G   A+  ++ G KVVA+SD  G I N  GIDIPA                  A+ DL +        LL  + DVL+P AL   + ++NA  V+A++I E AN PT   AD+IL+ KG+ + PDI  N+GGVTVSYFEWVQN  G  W  ++VN  LK  M+   + +  + Q  + N+R  A+   +NR+++A
Sbjct:  187 ATGTGAFYIMQGMLPKFDQYPENTTVAVQGFGNAGMVVAECLYQDGYKVVAISDSQGGIYNEQGIDIPAVIDYKQRHRTLAGMYCDQAICDLGENQQISNAELLALDVDVLIPAALENQITRDNADQVRARYIFEVANGPTTTAADDILASKGIYVFPDILVNAGGVTVSYFEWVQNRSGLYWSAKEVNDRLKEKMVEEAEHVWNITQELDVNVRTAAYIHALNRLSEA 415          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_PYRKO (Glutamate dehydrogenase OS=Pyrococcus kodakaraensis GN=gdhA PE=1 SV=4)

HSP 1 Score: 156.377 bits (394), Expect = 1.290e-37
Identity = 96/224 (42.86%), Postives = 122/224 (54.46%), Query Frame = 2
Query:    5 ATGLGVFFAT-EALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXX--DFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQA 664
            AT  G  F   EA  A     +     AIQG+GN G +  K   E  G KVVAVSD  G I NP+G+  PA              D  G   +   +LL  E D+L P A+ GV+ KENA +VKAK + E AN P  PEADEIL +KG++ +PD   N+GGVTVSYFEWVQNI GF W  E+    L   M  AF D+    +  N ++R  A+ + V+RV +A
Sbjct:  190 ATARGAAFTIREAAKALGWDDLKGKTIAIQGYGNAGYYLHKIMSEEFGMKVVAVSDSKGGIYNPDGLP-PADEVLKWKKEHGSVKDMPGTQNITNEELLELEVDILAPSAIEGVITKENADNVKAKIVAEVANGPVTPEADEILHEKGILQIPDFLCNAGGVTVSYFEWVQNINGFYWTVEETRKRLDDKMTKAFWDVFNTHKEKNIHMRDAAYVVAVSRVYEA 412          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE41_HALSA (NAD-specific glutamate dehydrogenase A OS=Halobacterium salinarium GN=gdhA PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 79/220 (35.91%), Postives = 126/220 (57.27%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQA 664
            A G  V   T+ +   + + +     A+QG+G+VG+ AA+   + G  +VA+SD+ GA+  P+GID  +             +     +   +LL  + DVL+P ALG V+ KENA  + A  ++E AN PT   AD IL+ + V ++PDI AN+GGVTVSYFEW+Q+I    W  E+VN EL+  M +A++ +K   +  +   R  A+ + ++R+A+A
Sbjct:  209 APGRSVAIITQLVCEYYDQPLDETTVAVQGYGSVGANAARLLDKWGATIVAISDVNGAMYEPDGIDTASVPSHDEEPEAVTTY-ADTVISNEELLTLDVDVLIPAALGNVITKENAEAIAADLVVEGANGPTTSTADSILADRDVAVIPDILANAGGVTVSYFEWLQDINRRAWSLERVNDELEAEMQAAWRAVKDEYENRDVTWRDAAYIVALSRIAEA 427          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE2_PEPAS (NAD-specific glutamate dehydrogenase OS=Peptostreptococcus asaccharolyticus PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 82/229 (35.81%), Postives = 116/229 (50.66%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG-----AIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            ATG GV           G  + + K A+QGFGNVG++  K     GGKV A+++        A+ N NGID                F G   +   +    E D++VP AL  V+  E A  + AK + EAAN PT PE D++L+++G+ + PDI  NSGGV VSY+EWVQN  G+ W E +V  + +  MM A K + A+   +N  LR   +   +  +  A  LR
Sbjct:  190 ATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAVYMYAIKSIDVAMKLR 418          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE2_SULSO (Glutamate dehydrogenase 2 OS=Sulfolobus solfataricus GN=gdhA-2 PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.208e-35
Identity = 84/226 (37.17%), Postives = 121/226 (53.54%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQ--THNCNLRMGAFTLGVNRVAQATLLR 676
            +TGLGV    +    +    +   +  IQGFGNVG +A KF  E G K+V VSD  G + N  GID+              ++  G  +   +LL+ +CD+L+P AL  V+NK NA  VKAK I+E AN P   +ADEI+ ++G+ ++PDI AN+GGV  SY EW  N  G +  +E+    +   M +AF  +    Q    + +LR  A  L V+RV +A   R
Sbjct:  192 STGLGVATIAKEAANKFIGGVEEARVIIQGFGNVGYYAGKFLSEMGAKIVGVSDSKGGVINEKGIDVGKAIEIKEKTGSVINYPEGRKVTNEELLISDCDILIPAALENVINKFNAPKVKAKLIVEGANGPLTADADEIMRQRGIAVVPDILANAGGVVGSYVEWANNKMGEIISDEEAKKLIVDRMNNAFNTLYDYHQKKLEDHDLRTAAMALAVDRVVRAMKAR 417          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_SULSH (NADP-specific glutamate dehydrogenase (Fragment) OS=Sulfolobus shibatae GN=gdhA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.829e-35
Identity = 84/222 (37.84%), Postives = 123/222 (55.41%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTH-----NCNLRMGAFTLGVNRV 655
            +TGLGV         +    I   +  IQGFGNVGS+ AKF +E G K++ VSDI G + + +GID+              ++  G  +   +LL  +CD+L+P A+  V+NK NA  VKAK I+E AN P   +ADEI+ ++G+V++PDI AN+GGV  SY EW  N  G +  +E+    +   M +AF    A+ + H     + +LR  A  L V+RV
Sbjct:  164 STGLGVATIAREAANKFIGGIEGSRVIIQGFGNVGSFTAKFLNEMGAKIIGVSDIGGGVISDDGIDVNKALEVVQSTGSVVNYPEGKKVTNEELLTSDCDILIPAAVENVINKFNAPKVKAKLIVEGANGPLAADADEIIKQRGIVVIPDILANAGGVVGSYVEWANNKSGGIISDEEAKKLIIDRMTNAF---NALYEFHKRKFADQDLRTVAMALRVDRV 382          
The following BLAST results are available for this feature:
BLAST of CK740249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
DHE3_PYRAB9.548e-4145.23Glutamate dehydrogenase OS=Pyrococcus abyssi GN=gd... [more]
DHE3_PYRFU1.247e-4043.69Glutamate dehydrogenase OS=Pyrococcus furiosus GN=... [more]
DHE3_PYRHO2.127e-4044.72Glutamate dehydrogenase OS=Pyrococcus horikoshii G... [more]
DHE3_PYREN4.738e-4044.72Glutamate dehydrogenase OS=Pyrococcus endeavori GN... [more]
DHE4_SYNY35.239e-3938.86NADP-specific glutamate dehydrogenase OS=Synechocy... [more]
DHE3_PYRKO1.290e-3742.86Glutamate dehydrogenase OS=Pyrococcus kodakaraensi... [more]
DHE41_HALSA1.092e-3635.91NAD-specific glutamate dehydrogenase A OS=Halobact... [more]
DHE2_PEPAS3.178e-3635.81NAD-specific glutamate dehydrogenase OS=Peptostrep... [more]
DHE2_SULSO1.208e-3537.17Glutamate dehydrogenase 2 OS=Sulfolobus solfataric... [more]
DHE4_SULSH7.829e-3537.84NADP-specific glutamate dehydrogenase (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6744 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740249 ID=CK740249; Name=CK740249; organism=Citrus sinensis; type=EST; length=677bp
AGCTGCTACTGGACTTGGAGTGTTCTTTGCAACCGAGGCTTTACTGGCTG
AACATGGAAAATCAATTTCCAATATGAAATTTGCTATCCAGGGTTTTGGA
AATGTGGGCTCCTGGGCAGCAAAATTTTTCCATGAGCATGGGGGAAAGGT
TGTTGCAGTCAGTGACATCACAGGTGCAATTAAGAATCCTAATGGTATTG
ATATTCCAGCTCTGCTAAAATACAAGAAGAGCAATAAAAGCCTGAATGAT
TTTCAAGGTGGAAATGCAATGGATTTAAATGACTTACTTGTCCATGAATG
CGATGTTCTTGTGCCATGTGCATTAGGTGGAGTCCTCAACAAGGAAAATG
CTGCAGATGTGAAGGCAAAGTTCATAATTGAAGCAGCCAATCACCCAACT
GACCCTGAAGCAGACGAGATTTTGTCCAAGAAGGGGGTTGTTATACTCCC
TGACATATATGCAAATTCAGGTGGTGTGACAGTGAGTTATTTTGAATGGG
TTCAGAACATTCAAGGATTCATGTGGGAAGAAGAGAAGGTTAATCATGAG
CTTAAGAGGTACATGATGAGTGCTTTCAAGGACATTAAGGCAATGTGCCA
AACTCACAACTGCAACTTGCGCATGGGTGCCTTCACTCTTGGGGTGAACC
GGGTTGCACAAGCTACTCTGTTGAGAG
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