CK740249

Overview
NameCK740249
Unique NameCK740249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE42_HALSA (NADP-specific glutamate dehydrogenase B OS=Halobacterium salinarium GN=gdhB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 76/220 (34.55%), Postives = 122/220 (55.45%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQA 664
            A G  V  AT   +  +   I +   A+QG+G+VG+ AA    + G +VVAVSD+ G + + +G+D  A                 N +   +LL  + DV++P A+G V+   NA  ++A  ++E AN PT   AD IL ++ V ++PDI AN+GGVTVSYFEW+Q+I    W  E+V  EL+  M+SA+  +++     + + R  A+ + + R+ +A
Sbjct:  202 APGRSVAIATREAINYYDIPIDDATVAVQGYGSVGANAALLLDDWGARVVAVSDVNGGVLDTDGLDTHAIPSHGNQPAAVMRHDAPNTLTNEELLELDVDVVIPAAVGNVITAANADRIQADIVVEGANGPTTSAADRILEERAVPVIPDILANAGGVTVSYFEWLQDINRRTWSPERVRDELESEMLSAWNAVRSEVDDGDLSWRDAAYVVALQRIGRA 421          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_AERPE (Glutamate dehydrogenase OS=Aeropyrum pernix GN=gdhA PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 86/228 (37.72%), Postives = 124/228 (54.39%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDI----KAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            +TG GV  +T     +    +     A+QG+GNVG +AAKF  E G K+VAVSD  G I +P GID               ++Q G  +   ++L    D+LVP A+  V+  ENA  +KAK I E AN PT   A++IL KKGV++LPDI AN+GGV +S+ EWV N  G    +E+   +L++ M+   K +    +   +    +LR  A+ + V RV +A  LR
Sbjct:  188 STGYGVAVSTRVAAEKFLGGLEGRTVAVQGYGNVGYYAAKFLAEMGAKIVAVSDSRGGIYDPEGIDPEEALKVKRSTGTVANYQRGKKISTMEILELPVDILVPAAIEEVITDENADRIKAKIISEGANGPTTTAAEKILVKKGVLVLPDILANAGGVIMSHIEWVNNRMGGWITDEEALKKLEQKMVENTKTVITYWEKNLKPEENSLRDAAYMIAVERVFRAMKLR 415          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_DICDI (Glutamate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gluD PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 80/178 (44.94%), Postives = 108/178 (60.67%), Query Frame = 2
Query:    5 ATGLGVFFAT------EALLAEHGKS--ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGG-NAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            ATGLGVF+        E +L + G +  I      IQGFGNVG +AAKFF + G KV+AV++  GA+ N +G++I A            DF G  N +D    L   CD+L+P AL   ++  N AD++AK I EAAN P  P AD+IL  +G VI+PD+  N+GGVTVSYFEW++N+
Sbjct:  225 ATGLGVFYGIREFLSYEEVLKKTGLTPGIKGKSIVIQGFGNVGYFAAKFFEQAGAKVIAVAEHNGAVYNADGLNIDALNKYKLQHGTFIDFPGATNIVDSVKALEIPCDILIPAALEKQIHIGNVADIQAKLIGEAANGPMTPRADQILLNRGHVIIPDLLLNAGGVTVSYFEWLKNL 402          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_CHAAC (Glutamate dehydrogenase, mitochondrial OS=Chaenocephalus aceratus GN=glud1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 70/178 (39.33%), Postives = 98/178 (55.06%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E            + +  F IQGFGNVG  + ++ H  G K V + +I GAI N +GID  A             F G    +   +L  +CD+L+P A    L + NA  +KAK I E AN PT P+AD+I  +  V+++PD+Y N+GGVTVSYFEW++N+
Sbjct:  216 SATGRGVFHGIENFMNEASYMSMVGLTPGVQDKTFVIQGFGNVGLHSMRYLHRFGAKCVGIGEIDGAIYNADGIDPKALEEYKLQNGTIVGFPGAKPYE-GSILEADCDILIPAAGEKQLTRNNARRIKAKIIAEGANGPTTPDADKIFLENNVMVIPDMYLNAGGVTVSYFEWLKNL 392          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_PONPY (Glutamate dehydrogenase 2, mitochondrial OS=Pongo pygmaeus GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.445e-30
Identity = 70/178 (39.33%), Postives = 97/178 (54.49%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E              +  F +QGFGNVG  + ++ H  G K VAV +  G+I NP+GID                F      +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct:  270 SATGRGVFHGIENFINEASYMSNVGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFRLQHGSILGFPKAKPYE-GSILEADCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNILVIPDVYLNAGGVTVSYFEWLKNL 446          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_HYLLA (Glutamate dehydrogenase 2, mitochondrial OS=Hylobates lar GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 69/178 (38.76%), Postives = 97/178 (54.49%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E              +  F +QGFGNVG  + ++ H  G K +AV +  G+I NP+GID                F      +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct:  267 SATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYVNAGGVTVSYFEWLKNL 443          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_GORGO (Glutamate dehydrogenase 2, mitochondrial OS=Gorilla gorilla gorilla GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 72/178 (40.45%), Postives = 98/178 (55.06%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG-KSISNMK-------FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E    SI  M        F +QGFGNVG  + ++ H  G K +AV +  G+I NP+GID                F      +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct:  270 SATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFRLQHGSILGFPKAKPYE-GSILEVDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEADRIFQERNILVIPDLYLNAGGVTVSYFEWLKNL 446          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_PANTR (Glutamate dehydrogenase 2, mitochondrial OS=Pan troglodytes GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 72/178 (40.45%), Postives = 99/178 (55.62%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG-KSISNMK-------FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E    SI  M        F +QGFGNVG  + ++ H  G K +AV +  G+I NP+GID                F      +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct:  270 SATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFRLQHGSLLGFPKAKPYE-GSILEIDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNILVIPDLYLNAGGVTVSYFEWLKNL 446          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_HUMAN (Glutamate dehydrogenase 2, mitochondrial OS=Homo sapiens GN=GLUD2 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 72/178 (40.45%), Postives = 99/178 (55.62%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG-KSISNMK-------FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E    SI  M        F +QGFGNVG  + ++ H  G K +AV +  G+I NP+GID                F      +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct:  270 SATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYE-GSILEVDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNILVIPDLYLNAGGVTVSYFEWLKNL 446          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_RAT (Glutamate dehydrogenase 1, mitochondrial OS=Rattus norvegicus GN=Glud1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 69/178 (38.76%), Postives = 97/178 (54.49%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E            + +  F +QGFGNVG  + ++ H  G K V V +  G+I NP+GID                F      +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct:  270 SATGRGVFHGIENFINEASYMSILGMTPGLGDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKVYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 446          
The following BLAST results are available for this feature:
BLAST of CK740249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
DHE42_HALSA2.975e-3434.55NADP-specific glutamate dehydrogenase B OS=Halobac... [more]
DHE3_AERPE3.885e-3437.72Glutamate dehydrogenase OS=Aeropyrum pernix GN=gdh... [more]
DHE3_DICDI4.296e-3344.94Glutamate dehydrogenase, mitochondrial OS=Dictyost... [more]
DHE3_CHAAC3.404e-3039.33Glutamate dehydrogenase, mitochondrial OS=Chaenoce... [more]
DHE4_PONPY4.445e-3039.33Glutamate dehydrogenase 2, mitochondrial OS=Pongo ... [more]
DHE4_HYLLA7.583e-3038.76Glutamate dehydrogenase 2, mitochondrial OS=Hyloba... [more]
DHE4_GORGO7.583e-3040.45Glutamate dehydrogenase 2, mitochondrial OS=Gorill... [more]
DHE4_PANTR9.903e-3040.45Glutamate dehydrogenase 2, mitochondrial OS=Pan tr... [more]
DHE4_HUMAN9.903e-3040.45Glutamate dehydrogenase 2, mitochondrial OS=Homo s... [more]
DHE3_RAT9.903e-3038.76Glutamate dehydrogenase 1, mitochondrial OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6744 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740249 ID=CK740249; Name=CK740249; organism=Citrus sinensis; type=EST; length=677bp
AGCTGCTACTGGACTTGGAGTGTTCTTTGCAACCGAGGCTTTACTGGCTG
AACATGGAAAATCAATTTCCAATATGAAATTTGCTATCCAGGGTTTTGGA
AATGTGGGCTCCTGGGCAGCAAAATTTTTCCATGAGCATGGGGGAAAGGT
TGTTGCAGTCAGTGACATCACAGGTGCAATTAAGAATCCTAATGGTATTG
ATATTCCAGCTCTGCTAAAATACAAGAAGAGCAATAAAAGCCTGAATGAT
TTTCAAGGTGGAAATGCAATGGATTTAAATGACTTACTTGTCCATGAATG
CGATGTTCTTGTGCCATGTGCATTAGGTGGAGTCCTCAACAAGGAAAATG
CTGCAGATGTGAAGGCAAAGTTCATAATTGAAGCAGCCAATCACCCAACT
GACCCTGAAGCAGACGAGATTTTGTCCAAGAAGGGGGTTGTTATACTCCC
TGACATATATGCAAATTCAGGTGGTGTGACAGTGAGTTATTTTGAATGGG
TTCAGAACATTCAAGGATTCATGTGGGAAGAAGAGAAGGTTAATCATGAG
CTTAAGAGGTACATGATGAGTGCTTTCAAGGACATTAAGGCAATGTGCCA
AACTCACAACTGCAACTTGCGCATGGGTGCCTTCACTCTTGGGGTGAACC
GGGTTGCACAAGCTACTCTGTTGAGAG
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