CK740249

Overview
NameCK740249
Unique NameCK740249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_HUMAN (Glutamate dehydrogenase 1, mitochondrial OS=Homo sapiens GN=GLUD1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 69/178 (38.76%), Postives = 97/178 (54.49%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E              +  F +QGFGNVG  + ++ H  G K +AV +  G+I NP+GID                F      +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct:  270 SATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 446          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_MOUSE (Glutamate dehydrogenase 1, mitochondrial OS=Mus musculus GN=Glud1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.689e-29
Identity = 69/178 (38.76%), Postives = 96/178 (53.93%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E              +  F +QGFGNVG  + ++ H  G K V V +  G+I NP+GID                F      +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct:  270 SATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKVYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 446          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_BOVIN (Glutamate dehydrogenase 1, mitochondrial OS=Bos taurus GN=GLUD1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.915e-29
Identity = 68/178 (38.20%), Postives = 95/178 (53.37%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +ATG GVF   E  + E              +  F +QGFGNVG  + ++ H  G K + V +  G+I NP+GID                F      +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW+ N+
Sbjct:  270 SATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNL 446          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_DROME (Glutamate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=Gdh PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 68/205 (33.17%), Postives = 100/205 (48.78%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ-------GFMWEEEKVNHELKRYMMS 571
            +ATG GVF   E  + E                 F +QGFGNVG    ++    G   + V +  G + NP GID                +Q     +  +L+  +CD+ +P A+  V+  ENA  ++AK I EAAN PT P AD+IL  + ++++PD+Y N+GGVTVS+FEW++N+         F +E E   H L     S
Sbjct:  261 SATGRGVFHGLENFINEANYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEGIDPKLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIPAAVEKVITSENANRIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNYHLLASVQQS 465          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_RHISN (Probable glutamate dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=NGR_a01340 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26
Identity = 69/178 (38.76%), Postives = 99/178 (55.62%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHG-------KSISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHE-CDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 511
            +TG GV FA ++ L +         +++      IQGFGNVG  AA+F  E    +V  +++  G + NP G+ I A             F G  ++  +   V + CDVL+P A+   ++ ENA  +KA  ++EAAN P   EADEIL  +GV ILPD+Y N+GGV VSYFE V+N+
Sbjct:  173 STGRGVQFAIQSSLRDTRTPGLDGRRNLKGASTVIQGFGNVGYHAARFLSEEDDARVTVLAERDGYVANPEGLSIEALKQHQIRTGSILGFDGAKSIAGDMCGVEQPCDVLIPAAMENAIHAENAERMKAHLVVEAANGPVTFEADEILRSRGVTILPDLYVNAGGVVVSYFERVKNL 350          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_CHICK (Glutamate dehydrogenase 1, mitochondrial OS=Gallus gallus GN=GLUD1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.480e-25
Identity = 64/173 (36.99%), Postives = 92/173 (53.18%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFE 496
            +ATG G+F   E  +                +  FA+QGFGNVG  + ++ H  G K VAV +  G+I NP+GID                F     ++   +L  +CD+L+P A    L K NA  VKAK I E AN PT P+AD+I  ++ ++++PD+Y N+GGVTVS F+
Sbjct:  216 SATGRGLFGHIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGEFDGSIWNPDGIDPKELEDYKLQHGTIMGFPKAQKLE-GSILETDCDILIPAASEKQLTKANAHKVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSAFZ 387          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_CORGL (NADP-specific glutamate dehydrogenase OS=Corynebacterium glutamicum GN=gdh PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 71/232 (30.60%), Postives = 104/232 (44.83%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIP-----AXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENA---ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDI--KAMCQTHNCNLRMGAFTLGVNRVAQATL 670
            ATG G  +    ++   G+SIS  K  + G GNV ++A +   E G  V+  SD +G +  PNG+D+                   + +G        +   +CD+ +PCA    LN ENA   AD   +F+ E AN P+ PEA E+  ++ +   P   AN+GGV  S  E  QN     W  E  +  L+  M + FK     A    H  +  +GA   G  +VA A L
Sbjct:  211 ATGYGCVYFVSEMIKAKGESISGQKIIVSGSGNVATYAIEKAQELGATVIGFSDSSGWVHTPNGVDVAKLREIKEVRRARVSVYADEVEGATYHTDGSIWDLKCDIALPCATQNELNGENAKTLADNGCRFVAEGANMPSTPEAVEVFRERDIRFGPGKAANAGGVATSALEMQQNASRDSWSFEYTDERLQVIMKNIFKTCAETAAEYGHENDYVVGANIAGFKKVADAML 442          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_COREF (NADP-specific glutamate dehydrogenase OS=Corynebacterium efficiens GN=gdh PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.600e-22
Identity = 68/232 (29.31%), Postives = 104/232 (44.83%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXX-----DFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENA---ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQT--HNCNLRMGAFTLGVNRVAQATL 670
            ATG G  +  + ++   G+++   K  + G GNV ++A +   E G  VV  SD +G +  PNG+D+                   + +G        +     D+ +PCA    L+ +NA   AD   +F+ E AN P+ PEA ++  ++GV+  P   AN+GGV  S  E  QN     W  E  +  L R M + FK      +   H  N  +GA   G  +VA A L
Sbjct:  211 ATGFGTVYFVQEMIKAEGETLEGKKVIVSGSGNVATYAIQKVQELGAVVVGFSDSSGWVSTPNGVDVAKLREIKEVRRARVSSYADEVEGAEYHTDGSIWDLTADIALPCATQNELDGDNARTLADNGCRFVAEGANMPSTPEAIDVFRERGVLFGPGKAANAGGVATSALEMQQNASRDSWSFEYTDERLHRIMKNIFKSCADTAKEYGHEKNYVVGANIAGFKKVADAML 442          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_CHLSO (NADP-specific glutamate dehydrogenase (Fragment) OS=Chlorella sorokiniana PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 63/233 (27.04%), Postives = 105/233 (45.06%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG-----IDIPAXXXXXXXXXXXXDFQGGNAMDLNDL-----LVHECDVLVPCALGGVLNKENAADV---KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQA 664
            ATG G     E +L + G+S+   +  + G GNV  + A+   E G  V+++SD  G +  PNG     +                +++   A+ + D      L  + D+  PCA    +++ +A  +     ++++E AN P+  EA    +K G++  P   AN+GGV VS  E  QN     W  E+V  +L+R M   +       + +N +L  GA   G  +VA A
Sbjct:  284 ATGYGAVLFVENVLKDKGESLKGKRCLVSGAGNVAQYCAELLLEKGAIVLSLSDSQGYVYEPNGFTREQLQAVQDMKKKNNSARISEYKSDTAVYVGDRRKPWELDCQVDIAFPCATQNEIDEHDAELLIKHGCQYVVEGANMPSTNEAIHKYNKAGIIYCPGKAANAGGVAVSGLEMTQNRMSLNWTREEVRDKLERIMKDIYDSAMGPSREYNVDLAAGANIAGFTKVADA 516          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_BACTN (Glutamate dehydrogenase OS=Bacteroides thetaiotaomicron GN=gdhA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 68/238 (28.57%), Postives = 100/238 (42.02%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGID-------IPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFII---EAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHN------CNLRMGAFTLGVNRVAQATL 670
            ATG G  +    +L   G  +      + G GNV  +  +   E GGKVV  SD  G I +P+GID       +              +  G   ++       +CD+ +P A    LN ++A  + A   I   E AN P+ PEA  +     ++  P   AN+GGV+VS  E  QN     W  E+V+ +LK    S  K+I   C  +        N   GA   G  +VA+A +
Sbjct:  206 ATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTIEKVIELGGKVVTCSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGAKPWGEKCDIALPSATQNELNGDHARQLVANGCIAVSEGANMPSTPEAVRVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSAEEVDEKLK----SIMKNIHEACVQYGTEADGYVNYVKGANVAGFMKVAKAMM 439          
The following BLAST results are available for this feature:
BLAST of CK740249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
DHE3_HUMAN9.903e-3038.76Glutamate dehydrogenase 1, mitochondrial OS=Homo s... [more]
DHE3_MOUSE1.689e-2938.76Glutamate dehydrogenase 1, mitochondrial OS=Mus mu... [more]
DHE3_BOVIN4.915e-2938.20Glutamate dehydrogenase 1, mitochondrial OS=Bos ta... [more]
DHE3_DROME2.697e-2733.17Glutamate dehydrogenase, mitochondrial OS=Drosophi... [more]
DHE3_RHISN6.643e-2638.76Probable glutamate dehydrogenase OS=Rhizobium sp. ... [more]
DHE3_CHICK1.480e-2536.99Glutamate dehydrogenase 1, mitochondrial OS=Gallus... [more]
DHE4_CORGL5.819e-2230.60NADP-specific glutamate dehydrogenase OS=Corynebac... [more]
DHE4_COREF7.600e-2229.31NADP-specific glutamate dehydrogenase OS=Corynebac... [more]
DHE4_CHLSO3.530e-1927.04NADP-specific glutamate dehydrogenase (Fragment) O... [more]
DHE3_BACTN4.039e-1528.57Glutamate dehydrogenase OS=Bacteroides thetaiotaom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6744 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740249 ID=CK740249; Name=CK740249; organism=Citrus sinensis; type=EST; length=677bp
AGCTGCTACTGGACTTGGAGTGTTCTTTGCAACCGAGGCTTTACTGGCTG
AACATGGAAAATCAATTTCCAATATGAAATTTGCTATCCAGGGTTTTGGA
AATGTGGGCTCCTGGGCAGCAAAATTTTTCCATGAGCATGGGGGAAAGGT
TGTTGCAGTCAGTGACATCACAGGTGCAATTAAGAATCCTAATGGTATTG
ATATTCCAGCTCTGCTAAAATACAAGAAGAGCAATAAAAGCCTGAATGAT
TTTCAAGGTGGAAATGCAATGGATTTAAATGACTTACTTGTCCATGAATG
CGATGTTCTTGTGCCATGTGCATTAGGTGGAGTCCTCAACAAGGAAAATG
CTGCAGATGTGAAGGCAAAGTTCATAATTGAAGCAGCCAATCACCCAACT
GACCCTGAAGCAGACGAGATTTTGTCCAAGAAGGGGGTTGTTATACTCCC
TGACATATATGCAAATTCAGGTGGTGTGACAGTGAGTTATTTTGAATGGG
TTCAGAACATTCAAGGATTCATGTGGGAAGAAGAGAAGGTTAATCATGAG
CTTAAGAGGTACATGATGAGTGCTTTCAAGGACATTAAGGCAATGTGCCA
AACTCACAACTGCAACTTGCGCATGGGTGCCTTCACTCTTGGGGTGAACC
GGGTTGCACAAGCTACTCTGTTGAGAG
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