CK740249

Overview
NameCK740249
Unique NameCK740249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHLE_BACST (Leucine dehydrogenase OS=Bacillus stearothermophilus GN=ldh PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.833e-14
Identity = 51/161 (31.68%), Postives = 75/161 (46.58%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAA-NHPTDPEADEILSKKGVVILPDIYANSGGV 478
            AT  GV+   +A   E     S+     A+QG GNV     +  HE G K++ V+DI   +                      +  G  A+D ND+   ECD+  PCALGG++N +    +KAK I  +A N   +P   +I+ + G+V  PD   N+GGV
Sbjct:  149 ATAYGVYRGMKAAAKEAFGSDSLEGKVVAVQGVGNVAYHLCRHLHEEGAKLI-VTDINKEV-----------------VARAVEEFGAKAVDPNDIYGVECDIFAPCALGGIINDQTIPQLKAKVIAGSADNQLKEPRHGDIIHEMGIVYAPDYVINAGGV 291          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_PRERU (NAD(P)-specific glutamate dehydrogenase OS=Prevotella ruminicola GN=gdhA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 62/238 (26.05%), Postives = 98/238 (41.18%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGID-------IPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFII---EAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHN------CNLRMGAFTLGVNRVAQATL 670
            ATG G  +  E +L   G+S+      + G GNV  +  +   + G K V  SD  G I +P+GID       +              +  G   ++       + D+  PCA    +N+  A  + A  +    E AN PT+P A ++     ++  P   +N+GGV  S  E  QN +   W  E+V+ +L   M     +I A C  +        N   GA   G  +VA+A +
Sbjct:  206 ATGYGNVYFLEDMLKTRGESLEGKTVLVSGSGNVAQYTIEKLLQLGAKPVTCSDSNGYIYDPDGIDAEKLAFIMELKNVKRGRIKEYAEKYGVKYVENARPWGEKADIATPCATQDEINEAEAKTLIANGVFAVSEGANMPTEPAAIKVFQDAKILYCPGKASNAGGVATSGLEMSQNSERLSWTREEVDTKLHNIM----DEIHANCVKYGTEPDGYINYVKGANVAGFMKVAKAMM 439          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_NEUIN (NADP-specific glutamate dehydrogenase OS=Neurospora intermedia GN=GDH PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 68/212 (32.08%), Postives = 96/212 (45.28%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI--KNPNGI---DIPAXXXXXXXXXXXXDFQGGNAMDLND-----LLVHECDVLVPCALGGVLNKENAADVKA---KFIIEAANHPTDPEADEILS-----KKGVVI--LPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAF 577
            ATG G+ +    +L   G  S +  + A+ G GNV  +AA    E G  VV++SD  GA+     +GI   DI A             FQ    +   +     L V + D+ +PCA    ++KE A  + A   KF+ E +N     EA E+       KKG  +   P   AN GGV VS  E  QN Q   W + +V+ +LK  M +AF
Sbjct:  196 ATGYGLVYYVGHMLEYSGAGSYAGKRVALSGSGNVAQYAALKLIELGATVVSLSDSKGALVATGESGITVEDINAVMAIKEARQSLTSFQHAGHLKWIEGARPWLHVGKVDIALPCATQNEVSKEEAEGLLAAGCKFVAEGSNMGCTLEAIEVFENHRKEKKGEAVWYAPGKAANCGGVAVSGLEMAQNSQRLNWTQAEVDEKLKDIMKNAF 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_NEUCR (NADP-specific glutamate dehydrogenase OS=Neurospora crassa GN=gdh PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 68/212 (32.08%), Postives = 96/212 (45.28%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI--KNPNGI---DIPAXXXXXXXXXXXXDFQGGNAMDLND-----LLVHECDVLVPCALGGVLNKENAADVKA---KFIIEAANHPTDPEADEILS-----KKGVVI--LPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAF 577
            ATG G+ +    +L   G  S +  + A+ G GNV  +AA    E G  VV++SD  GA+     +GI   DI A             FQ    +   +     L V + D+ +PCA    ++KE A  + A   KF+ E +N     EA E+       KKG  +   P   AN GGV VS  E  QN Q   W + +V+ +LK  M +AF
Sbjct:  196 ATGYGLVYYVGHMLEYSGAGSYAGKRVALSGSGNVAQYAALKLIELGATVVSLSDSKGALVATGESGITVEDINAVMAIKEARQSLTSFQHAGHLKWIEGARPWLHVGKVDIALPCATQNEVSKEEAEGLLAAGCKFVAEGSNMGCTLEAIEVFENNRKEKKGEAVWYAPGKAANCGGVAVSGLEMAQNSQRLNWTQAEVDEKLKDIMKNAF 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_NEUSI (NADP-specific glutamate dehydrogenase OS=Neurospora sitophila GN=GDH PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 68/212 (32.08%), Postives = 96/212 (45.28%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI--KNPNGI---DIPAXXXXXXXXXXXXDFQGGNAMDLND-----LLVHECDVLVPCALGGVLNKENAADVKA---KFIIEAANHPTDPEADEILS-----KKGVVI--LPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAF 577
            ATG G+ +    +L   G  S +  + A+ G GNV  +AA    E G  VV++SD  GA+     +GI   DI A             FQ    +   +     L V + D+ +PCA    ++KE A  + A   KF+ E +N     EA E+       KKG  +   P   AN GGV VS  E  QN Q   W + +V+ +LK  M +AF
Sbjct:  196 ATGYGLVYYVGHMLEYSGAGSYAGKRVALSGSGNVAQYAALKLIELGATVVSLSDSKGALVATGESGITVEDINAIMAIKEARQSLTTFQHAGHVKWIEGARPWLHVGKVDIALPCATQNEVSKEEAEGLLAAGCKFVAEGSNMGCTLEAIEVFENNRKEKKGEAVWYAPGKAANCGGVAVSGLEMAQNSQRLNWTQAEVDEKLKDIMKNAF 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE2_BACFR (NAD-specific glutamate dehydrogenase OS=Bacteroides fragilis GN=gdhB PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 67/239 (28.03%), Postives = 92/239 (38.49%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXD--------FQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFII---EAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHN------CNLRMGAFTLGVNRVAQATL 670
            ATG G  +    +L   G  I     AI GFGNV   AA    E G KVV +S   G I +PNGI                D        F G   +        + D+ +PCA    LN E+A ++    ++   E +N    PEA ++  +   +  P    N+GGV  S  E  QN     W   +V+ +L     S    I A C  +        N   GA   G  +VA A +
Sbjct:  206 ATGFGGLYFVNQMLQTKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPNGISGEKIDYMLELRASGNDIVAPYADEFPGSTFVAGKRPWEVKADIALPCATQNELNGEDAKNLIDNNVLCVGEISNMGCTPEAIDLFIEHKTMYAPGKAVNAGGVATSGLEMSQNAMHLSWSAAEVDEKLH----SIMHGIHAQCVKYGTEPDGYINYVKGANIAGFMKVAHAMM 440          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE4_PSYT1 (NADP-specific glutamate dehydrogenase OS=Psychrobacter sp. (strain TAD1) GN=gdhA PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 67/235 (28.51%), Postives = 99/235 (42.13%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGID------IPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENA---ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQN----IQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHN--CNLRMGAFTLGVNRVAQA 664
            ATG G  +  + +LA   +SI   K  + G GNV   AA+     G  V+ VSD  G I +  G++      +              +  GG  M        + D+ +P A    +N+E+A    D   K+I+E AN P   EA + +    V   P   AN+GGV VS  E  QN     Q F   +E++   +K    S+ +  +   QT     +   GA  +G  RVA A
Sbjct:  206 ATGYGAVYFLQNMLAAQNESIEGKKVLVSGAGNVSLHAAEKATLIGAIVLTVSDSKGTIYDAKGLNQEKIDWLKVQKDQHKPLADYVEVFGGEWMADQKPWSIKADIAIPSATQNEINEEDAKLLVDNGVKYIVEGANMPLTAEAIDYIRLHRVHYAPGKAANAGGVAVSALEMSQNSVRQYQTFEQVDERLQGIMKDIHDSSAQASEMYGQTDEGYIDYMSGANMVGFKRVADA 440          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE2_PORGI (NAD-specific glutamate dehydrogenase OS=Porphyromonas gingivalis GN=gdh PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 58/237 (24.47%), Postives = 92/237 (38.82%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXD---------FQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAK---FIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHN-----CNLRMGAFTLGVNRVAQA 664
            +TG G  +  + +  ++G        AI GFGNV    A+   E G KVV +S   G + +P+GI+ P             +         F              + D  +PCA    +N E+A  +       + E +N     EA E      ++  P    N+GGV+ S  E  QN    +W     N E+ +++    +DI   C T+       +   GA   G  +VA+A
Sbjct:  206 STGFGAVYFVQNMCKQNGVDYKGKTLAISGFGNVAWGVAQKATELGIKVVTISGPDGYVYDPDGINTPEKFRCMLDLRDSGNDVVSDYVKRFPNAQFFPGKKPWEQKVDFAMPCATQNEMNLEDAKTLHKNGVTLVAETSNMGCTAEASEYYVANKMLFAPGKAVNAGGVSCSGLEMTQNAMHLVW----TNEEVDKWLHQIMQDIHEQCVTYGKDGNYIDYVKGANIAGFMKVAKA 438          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE2_PORG3 (NAD-specific glutamate dehydrogenase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gdh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 58/237 (24.47%), Postives = 92/237 (38.82%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXD---------FQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAK---FIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHN-----CNLRMGAFTLGVNRVAQA 664
            +TG G  +  + +  ++G        AI GFGNV    A+   E G KVV +S   G + +P+GI+ P             +         F              + D  +PCA    +N E+A  +       + E +N     EA E      ++  P    N+GGV+ S  E  QN    +W     N E+ +++    +DI   C T+       +   GA   G  +VA+A
Sbjct:  206 STGFGAVYFVQNMCKQNGVDYKGKTLAISGFGNVAWGVAQKATELGIKVVTISGPDGYVYDPDGINTPEKFRCMLDLRDSGNDVVSDYVKRFPNAQFFPGKKPWEQKVDFAMPCATQNEMNLEDAKTLHKNGVTLVAETSNMGCTAEASEYYVANKMLFAPGKAVNAGGVSCSGLEMTQNAMHLVW----TNEEVDKWLHQIMQDIHEQCVTYGKDGNYIDYVKGANIAGFMKVAKA 438          
The following BLAST results are available for this feature:
BLAST of CK740249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
DHLE_BACST5.833e-1431.68Leucine dehydrogenase OS=Bacillus stearothermophil... [more]
DHE4_PRERU2.895e-1326.05NAD(P)-specific glutamate dehydrogenase OS=Prevote... [more]
DHE4_NEUIN4.938e-1332.08NADP-specific glutamate dehydrogenase OS=Neurospor... [more]
DHE4_NEUCR4.938e-1332.08NADP-specific glutamate dehydrogenase OS=Neurospor... [more]
DHE4_NEUSI8.423e-1332.08NADP-specific glutamate dehydrogenase OS=Neurospor... [more]
DHE2_BACFR4.180e-1228.03NAD-specific glutamate dehydrogenase OS=Bacteroide... [more]
DHE4_PSYT11.216e-1128.51NADP-specific glutamate dehydrogenase OS=Psychroba... [more]
DHE2_PORGI3.539e-1124.47NAD-specific glutamate dehydrogenase OS=Porphyromo... [more]
DHE2_PORG33.539e-1124.47NAD-specific glutamate dehydrogenase OS=Porphyromo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6744 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740249 ID=CK740249; Name=CK740249; organism=Citrus sinensis; type=EST; length=677bp
AGCTGCTACTGGACTTGGAGTGTTCTTTGCAACCGAGGCTTTACTGGCTG
AACATGGAAAATCAATTTCCAATATGAAATTTGCTATCCAGGGTTTTGGA
AATGTGGGCTCCTGGGCAGCAAAATTTTTCCATGAGCATGGGGGAAAGGT
TGTTGCAGTCAGTGACATCACAGGTGCAATTAAGAATCCTAATGGTATTG
ATATTCCAGCTCTGCTAAAATACAAGAAGAGCAATAAAAGCCTGAATGAT
TTTCAAGGTGGAAATGCAATGGATTTAAATGACTTACTTGTCCATGAATG
CGATGTTCTTGTGCCATGTGCATTAGGTGGAGTCCTCAACAAGGAAAATG
CTGCAGATGTGAAGGCAAAGTTCATAATTGAAGCAGCCAATCACCCAACT
GACCCTGAAGCAGACGAGATTTTGTCCAAGAAGGGGGTTGTTATACTCCC
TGACATATATGCAAATTCAGGTGGTGTGACAGTGAGTTATTTTGAATGGG
TTCAGAACATTCAAGGATTCATGTGGGAAGAAGAGAAGGTTAATCATGAG
CTTAAGAGGTACATGATGAGTGCTTTCAAGGACATTAAGGCAATGTGCCA
AACTCACAACTGCAACTTGCGCATGGGTGCCTTCACTCTTGGGGTGAACC
GGGTTGCACAAGCTACTCTGTTGAGAG
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