CK740254

Overview
NameCK740254
Unique NameCK740254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QAI TG+GPLENLA H+A+P + N ++  T+
Sbjct:  169 YPGGS-FDPLALA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATN 240
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L  KEIKNGRLAM +  GF  QAI TG+GPLENLA H+ADP + N ++  T+
Sbjct:  190 YPGGS-FDPLGLA-DDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATN 261
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QAI TG+GP+ENLA H+ADP   N ++  T+
Sbjct:  188 YPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATN 259
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KE+KNGRLAM +  GF  QAI TG+GPLENLA H+ADP + N ++  T+
Sbjct:  179 YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 250
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.538e-12
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QAI TG+GP+ENL  HVADP   N ++  T+
Sbjct:  189 YPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATN 260

HSP 2 Score: 21.1718 bits (43), Expect = 4.538e-12
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2 
Query:    8 LFVVQLALMGWVEGRR 55
            ++  Q+ LMG+VEG R
Sbjct:  160 IWAAQVVLMGFVEGYR 175
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.540e-12
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:  129 DVGYPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            D  YPGG  FDP+      P+    L+ KE+KNGRLAM +  GF  QAI TG+GP+ENL  HVADP   N ++  T+
Sbjct:  184 DKVYPGGA-FDPLGLA-DDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATN 258

HSP 2 Score: 22.7126 bits (47), Expect = 4.540e-12
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2 
Query:    8 LFVVQLALMGWVEGRR 55
            ++ VQ+ LMG+VEG R
Sbjct:  158 IWAVQVVLMGFVEGYR 173
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.540e-12
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:  129 DVGYPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            D  YPGG  FDP+      P+    L+ KE+KNGRLAM +  GF  QAI TG+GP+ENL  HVADP   N ++  T+
Sbjct:  184 DKVYPGGA-FDPLGLA-DDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATN 258

HSP 2 Score: 22.7126 bits (47), Expect = 4.540e-12
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2 
Query:    8 LFVVQLALMGWVEGRR 55
            ++ VQ+ LMG+VEG R
Sbjct:  158 IWAVQVVLMGFVEGYR 173
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.557e-12
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QAI TG+GP+ENL+ H+ADP   N ++  T+
Sbjct:  161 YPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATN 232

HSP 2 Score: 20.4014 bits (41), Expect = 4.557e-12
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2 
Query:    8 LFVVQLALMGWVEGRR 55
            ++  Q+ LMG+VEG R
Sbjct:  132 IWASQVVLMGFVEGYR 147
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KE+KNGRLAM +  GF  QAI TG+GPLENLA H+ADP + N ++  T+
Sbjct:  188 YPGGS-FDPLGLAE-DPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATN 259
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KE KNGRLAM +  GF  QAI TG+GPLENLA H+ DP + N +S  T+
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATN 262
The following BLAST results are available for this feature:
BLAST of CK740254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_SOYBN4.272e-1252.70Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PETSP4.272e-1254.05Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_LEMGI4.272e-1252.70Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_CUCSA4.272e-1252.70Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP4.538e-1252.70Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_ORYSJ4.540e-1249.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.540e-1249.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC4.557e-1251.35Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_APIGR5.579e-1252.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP7.287e-1252.70Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6396 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740254 ID=CK740254; Name=CK740254; organism=Citrus sinensis; type=EST; length=527bp
CACAACTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCA
GAAGATGGGCCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGA
TCTCCCAAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGA
TATGGTTTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATG
GTGTTGAGGACTAAGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTT
CGTTGGCTTCTGCTTCCAAGCCATTTATACAGGGCAGGGTCCCCTTGAAA
ACTTGGCTTGCCATGTTGCAGATCCTGGTCATTGCAACGTATTCTCGGCT
TTCACATCACAATGATGCTTGGATTGGTACTGAGAAGAATCCCAAAATTT
GAGCTGTAGAATCAACAACGAGGGATACATGCATTTACAGTGTATGGTCT
TTTGTCATGGGCAGAACAATTGTACGTACAAAAAAGAGTAGTTCTAGAAT
TTGATCTGATTCTTGATTCTTAAGATA
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