CK740254

Overview
NameCK740254
Unique NameCK740254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KE+K GRLAML+  GF  QAI TG+GPLENLA H+ADP + N ++  T+
Sbjct:  189 YPGGS-FDPLGLA-DDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATN 260          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    ++ KE+KNGRLAM +  GF  QAI TG+GPLENLA H+ADP + N ++  T+
Sbjct:  189 YPGGT-FDPLGLA-DDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 260          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      P+    L+ KEIKNGRLAM +  GF  QAI TG+GP+ENLA H+ADP + N ++  T+
Sbjct:  202 YPGGN-FDPLGLA-DDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATN 273          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KE+KNGRLAM +  GF   AI TG+GPLENLA H+ADP + N +S  T+
Sbjct:  152 YPGGS-FDPLGLAE-VPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATN 223          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QAI TG+GPL+NL  H+ADP + N ++  T+
Sbjct:  191 YPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATN 262          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QAI TG+GP+ENL  HVADP   N ++  T+
Sbjct:  189 YPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATN 260          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.675e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QAI TG+GP+ENL+ H+ DP   N ++  T+
Sbjct:  189 YPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATN 260          

HSP 2 Score: 20.7866 bits (42), Expect = 1.675e-11
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:    8 LFVVQLALMGWVEGRR 55
            ++  Q+ LMG+VEG R
Sbjct:  160 IWACQVVLMGFVEGYR 175          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KE+KNGRLAM +  GF  QAI TG+GP+ENL+ H+ADP   N ++  T+
Sbjct:  189 YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATN 260          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+     + E    L+ KEIKNGRLAM +  GF  QAI TG+GPLENLA H+ADP + N ++  T+
Sbjct:  188 YPGGS-FDPLGLADDA-EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATN 259          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      P+    L+ KEIKNGRLAM +  GF  QAI TG+GPLE+LA H+ADP + N +   T+
Sbjct:  190 YPGGS-FDPLGLAE-RPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATN 261          
The following BLAST results are available for this feature:
BLAST of CK740254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB22_MAIZE7.287e-1252.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE9.517e-1251.35Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2A_PINSY1.243e-1151.35Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_PEA1.243e-1152.70Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB27_TOBAC1.623e-1151.35Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_TOBAC1.623e-1152.70Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC1.675e-1150.00Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_POLMU2.120e-1150.00Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_HORVU2.120e-1152.70Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT2.120e-1151.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6396 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740254 ID=CK740254; Name=CK740254; organism=Citrus sinensis; type=EST; length=527bp
CACAACTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCA
GAAGATGGGCCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGA
TCTCCCAAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGA
TATGGTTTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATG
GTGTTGAGGACTAAGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTT
CGTTGGCTTCTGCTTCCAAGCCATTTATACAGGGCAGGGTCCCCTTGAAA
ACTTGGCTTGCCATGTTGCAGATCCTGGTCATTGCAACGTATTCTCGGCT
TTCACATCACAATGATGCTTGGATTGGTACTGAGAAGAATCCCAAAATTT
GAGCTGTAGAATCAACAACGAGGGATACATGCATTTACAGTGTATGGTCT
TTTGTCATGGGCAGAACAATTGTACGTACAAAAAAGAGTAGTTCTAGAAT
TTGATCTGATTCTTGATTCTTAAGATA
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