CK740254

Overview
NameCK740254
Unique NameCK740254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KE+KNGRLAM +  GF  QAI TG+GPLENLA H+A P + N ++  T+
Sbjct:  187 YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATN 258          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.820e-11
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFT 356
            YPG   FDP+      P+    L+ KEIKNGRLAM A +GF  QAI TG+GP+ENL  H+A+P   N F+  T
Sbjct:  198 YPGEA-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYAT 268          

HSP 2 Score: 20.4014 bits (41), Expect = 2.820e-11
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:   17 VQLALMGWVEGRR 55
            VQ+ LMG VEG R
Sbjct:  172 VQVVLMGLVEGYR 184          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 2.823e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      P+    L+ KEIKNGRLAM +  GF  QAI TG+GP+ENL  H+ADP   N ++  T+
Sbjct:  189 YPGGA-FDPLGLA-DDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATN 260          

HSP 2 Score: 20.7866 bits (42), Expect = 2.823e-11
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:    8 LFVVQLALMGWVEGRR 55
            ++  Q+ LMG+VEG R
Sbjct:  160 IWACQVVLMGFVEGYR 175          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG +FDP+      P     L+  EIK+ RLAM+ F+GF  QA  TG+GPL N A H++DP H  +   F+S
Sbjct:  214 YPGGKFFDPLGLA-SDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      P+    ++ KEIKNGRLAM +  GF  QAI TG+GP+ENLA H+ADP + N ++  T+
Sbjct:  202 YPGGN-FDPLGLA-DDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATN 273          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.665e-11
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      P+    L+ KE+KNGRLAM +  GF  QAI TG+GP++NL  HVADP   N ++  T+
Sbjct:  189 YPGGA-FDPLGLA-DDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATN 260          

HSP 2 Score: 21.1718 bits (43), Expect = 3.665e-11
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:    8 LFVVQLALMGWVEGRR 55
            ++  Q+ LMG+VEG R
Sbjct:  160 IWATQVVLMGFVEGYR 175          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            Y GG  FDP+  G   PE    L+ KEIKNGRLAM +  GF  QAI TG+GP+ENLA H+ DP + N ++  T+
Sbjct:  188 YLGGS-FDPLGLG-DDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATN 259          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADP 326
            +PGG  FDP+   +  PE   +L+ KEIKNGRLAM A +GF  QA  TG+GP+ENLA H++DP
Sbjct:  201 HPGGP-FDPLGLAK-DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDP 261          
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 3
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADP 326
            YPGG +FDP+      P     L+ KEIKNGRLAM +  GF  QAI TG+GPLENL  H+ DP
Sbjct:  191 YPGGQYFDPLGLA-DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDP 252          
The following BLAST results are available for this feature:
BLAST of CK740254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB23_SOYBN2.769e-1151.35Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2_DUNSA2.820e-1150.68Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI2.823e-1150.00Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB4B_ARATH3.616e-1145.95Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB2A_PYRPY3.616e-1150.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB215_PEA3.665e-1148.65Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB48_MAIZE4.723e-1151.35Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB26_ARATH4.723e-1155.56Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_HORVU4.723e-1155.56Chlorophyll a-b binding protein of LHCII type III,... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6396 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740254 ID=CK740254; Name=CK740254; organism=Citrus sinensis; type=EST; length=527bp
CACAACTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCA
GAAGATGGGCCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGA
TCTCCCAAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGA
TATGGTTTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATG
GTGTTGAGGACTAAGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTT
CGTTGGCTTCTGCTTCCAAGCCATTTATACAGGGCAGGGTCCCCTTGAAA
ACTTGGCTTGCCATGTTGCAGATCCTGGTCATTGCAACGTATTCTCGGCT
TTCACATCACAATGATGCTTGGATTGGTACTGAGAAGAATCCCAAAATTT
GAGCTGTAGAATCAACAACGAGGGATACATGCATTTACAGTGTATGGTCT
TTTGTCATGGGCAGAACAATTGTACGTACAAAAAAGAGTAGTTCTAGAAT
TTGATCTGATTCTTGATTCTTAAGATA
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