CK740258

Overview
NameCK740258
Unique NameCK740258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1A_DANRE (Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.106e-11
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 3 
Query:  111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            +  LKFTSK L+R                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+M  + K+
Sbjct:    5 LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKA 95

HSP 2 Score: 22.3274 bits (46), Expect = 8.106e-11
Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:  385 LESSLATGNLQKMSETMDSF 444
            L+ +L++ +LQK+S  MD F
Sbjct:   96 LDKALSSMDLQKVSAVMDKF 115
The following BLAST results are available for this feature:
BLAST of CK740258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CHM1A_DANRE8.106e-1136.26Charged multivesicular body protein 1a OS=Danio re... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6400 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740258 ID=CK740258; Name=CK740258; organism=Citrus sinensis; type=EST; length=463bp
AAAAAGTCGTCTTCGATCAAAATCCCCAATTCTTTGAAACCCTTGCTTGA
TTCAATTCTCAGATCCGAAACATTTCGCGATGGGAAACACGGAGAAGCCT
GTTGAATCAGATCATGGACTTGAAATTCACCTCAAAATCTCTTCAACGCC
AGGCGAGAAAATGCGAGAAGGAAGAGAAAGCCGAGAAATTGAAGGTGAAA
AAGGCCATCGAGAAAGGCAACATGGACGGCGCCAGAATCTACGCCGAGAA
CTCCATCCGCAAGCGCACCGAACAGATGAATTATCTCCGCCTCGCTTCTC
GTCTCGACGCCGTCGTGGCTCGTCTCGACACCCAGGCCAAAATGACCACC
ATTAATAAGTCCATGGCTAACATCGTCAAGTCCCCTTGAATCCTCTCTCG
CTACCGGTAATTTGCAGAAGATGTCAGAGACTATGGACTCATTTTGAGAA
GCAGTTTTGTGAA
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