CK740263

Overview
NameCK740263
Unique NameCK740263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.074e-37
Identity = 85/174 (48.85%), Postives = 108/174 (62.07%), Query Frame = 3
Query:   81 FLFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGA 593
            F FL  LV+ +   +  VAAQN   +  GAFTGE+S  ML +LG+  V+LGHSERR +  E+NE V  K   A +  L  I CVGETL+QREA  TM++V  Q K A+A   +   +  ++AYEPVWAIGTGK AT  QA EV  E+RK +   TS ++A    I YGGSV  A
Sbjct:   44 FPFLSKLVEQAKGSEVKVAAQNMHFEDSGAFTGEVSPVMLKDLGVTHVVLGHSERRELFAETNELVNKKTKAAFAHDLTPIVCVGETLDQREANETMNIVGEQVKQAVAGLTNEQVAETIIAYEPVWAIGTGKTATSEQANEVCTEIRKVVAEVTSADVAEKVIIQYGGSVKPA 217          

HSP 2 Score: 33.4982 bits (75), Expect = 1.074e-37
Identity = 17/28 (60.71%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLNRSS 667
            K  N  EL AQ D+DG LVGGASL+  S
Sbjct:  215 KPANVDELLAQSDIDGALVGGASLDPES 242          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAE (Triosephosphate isomerase OS=Pseudomonas aeruginosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.074e-37
Identity = 82/160 (51.25%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  129 VAAQNCWVKK-GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            V AQN  V+   GA TGE +   L ++G   V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGSV  A+A
Sbjct:   60 VGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASA 218          

HSP 2 Score: 32.7278 bits (73), Expect = 1.074e-37
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            K  +  EL   PD+DG LVGGASLN      +IC
Sbjct:  214 KAASAAELFGMPDIDGGLVGGASLNADEF-GAIC 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAB (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.074e-37
Identity = 82/160 (51.25%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  129 VAAQNCWVKK-GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            V AQN  V+   GA TGE +   L ++G   V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGSV  A+A
Sbjct:   60 VGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASA 218          

HSP 2 Score: 32.7278 bits (73), Expect = 1.074e-37
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            K  +  EL   PD+DG LVGGASLN      +IC
Sbjct:  214 KAASAAELFGMPDIDGGLVGGASLNADEF-GAIC 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA8 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.074e-37
Identity = 82/160 (51.25%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  129 VAAQNCWVKK-GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            V AQN  V+   GA TGE +   L ++G   V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGSV  A+A
Sbjct:   60 VGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASA 218          

HSP 2 Score: 32.7278 bits (73), Expect = 1.074e-37
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            K  +  EL   PD+DG LVGGASLN      +IC
Sbjct:  214 KAASAAELFGMPDIDGGLVGGASLNADEF-GAIC 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.399e-37
Identity = 79/157 (50.32%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  135 AQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            AQ+C V   GAFTGE SA ML   G  + ++GHSERR+I  ES+E V DK A     GL  + C+GETLEQ EAG T  VV AQ +A+  +  ++S +N V+ YEPVWAIGTGK ATP  AQE+   +R WL A     +A   +I+YGGSV  A +
Sbjct:   63 AQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWL-AEQDAAVANKVQILYGGSVKPANS 218          

HSP 2 Score: 30.4166 bits (67), Expect = 1.399e-37
Identity = 15/25 (60.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLN 658
            K  N  EL  Q D+DG LVGGASL+
Sbjct:  214 KPANSAELFGQADIDGGLVGGASLD 238          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_BACWK (Triosephosphate isomerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.399e-37
Identity = 82/174 (47.13%), Postives = 105/174 (60.34%), Query Frame = 3
Query:   96 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATARNWL 611
            LV  +   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A        + V+AYEP+WAIGTGK ++ A A EV   +RK +    SPE A A RI YGGSV     + ++
Sbjct:   50 LVAKAEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKVTVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYM 223          

HSP 2 Score: 33.4982 bits (75), Expect = 1.399e-37
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSS 667
            N KE  AQ D+DG LVGGASL  +S
Sbjct:  218 NIKEYMAQSDIDGALVGGASLEPAS 242          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.822e-37
Identity = 75/165 (45.45%), Postives = 106/165 (64.24%), Query Frame = 3
Query:  105 SSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGA 593
            ++L    HV +QN    + GA+TGE+S  ML NL I +VI+GHSERR I  E++  V  KV  AL+ GL  I C+GE+  +R  G T  V++AQ + + D   +  + ++V+AYEPVWAIGTGK A+ A AQE H  +RK+L A  + ++A    ++YGGSVN A
Sbjct:   57 ANLNEAIHVGSQNVSEHESGAYTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAALNAGLTPILCIGESEAERATGETETVLSAQIQPVIDEIGIEKFKDVVIAYEPVWAIGTGKTASSAMAQETHQFIRKFL-AQQNEQVADKVPLLYGGSVNAA 220          

HSP 2 Score: 35.4242 bits (80), Expect = 1.822e-37
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NC+EL AQ D+DG L+GGASL
Sbjct:  221 NCEELFAQTDIDGGLIGGASL 241          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPF (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.823e-37
Identity = 81/160 (50.62%), Postives = 105/160 (65.62%), Query Frame = 3
Query:  129 VAAQNCWVKK-GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            V AQN  V+   GA TGEI+   LV+ G   V++GHSERR I+ E +  +  K A A + GL  + CVGETLEQREAG T++VV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R+ L A  S E+A   R++YGGSV  A A
Sbjct:   60 VGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRQIMGERDGMLNRKFAAAQACGLIPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHKAIREQLAAENS-EVARGVRLLYGGSVKAANA 218          

HSP 2 Score: 33.8834 bits (76), Expect = 1.823e-37
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            K  N  EL   PD+DG L+GGASLN      +IC
Sbjct:  214 KAANAVELFGMPDIDGGLIGGASLNADEF-GAIC 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PELLD (Triosephosphate isomerase OS=Pelodictyon luteolum (strain DSM 273) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.823e-37
Identity = 74/157 (47.13%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQNC  +  GA+TGE+S  ML  +G  +VI+GHSERR    E++E V  ++   L+ G+KVI CVGETL +RE G T  VV+ Q       V+  +++V+AYEPVWAIGTGK A+  QAQEVH  +R  +      E++ A RI YGGSV  + A
Sbjct:   62 LVAQNCHYEDDGAYTGEVSTGMLKAVGCSYVIIGHSERRQYFGETDETVNLRIKKVLASGMKVILCVGETLAEREEGVTGTVVSRQVTEGLKGVADITDLVIAYEPVWAIGTGKTASSDQAQEVHRLIRDTVKGMYGAEVSEAVRIQYGGSVKASNA 218          

HSP 2 Score: 36.5798 bits (83), Expect = 1.823e-37
Identity = 16/33 (48.48%), Postives = 22/33 (66.67%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLNRSSLTSSI 682
            K  N +EL A PD+DG L+GGASLN +   + +
Sbjct:  214 KASNAEELFAMPDIDGGLIGGASLNAADFAAIV 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CARHZ (Triosephosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.823e-37
Identity = 78/154 (50.65%), Postives = 98/154 (63.64%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSWS-NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSV 584
            + AQN   +K GAFTGE+S  ML ++G+ +VILGHSERR    E++E +  K+  A + GL  I CVGETLE+RE G T  VV  Q  K +A   +  + N+ +AYEPVWAIGTGK ATP  AQEV   +R+ L      EIA   RI YGGSV
Sbjct:   61 LGAQNMHFEKEGAFTGEVSPAMLQDIGVKYVILGHSERRAYFGETDELINQKIKAAFTWGLNPIFCVGETLEERERGITKAVVEIQVLKGLAGVTAEQAENLTIAYEPVWAIGTGKTATPDDAQEVCQFIRELLVKLFGREIADKVRIQYGGSV 214          

HSP 2 Score: 38.891 bits (89), Expect = 1.823e-37
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSI 682
            N KEL A+PD+DG LVGGASL   S T+ +
Sbjct:  218 NIKELIAKPDIDGALVGGASLKVESFTAIV 247          
The following BLAST results are available for this feature:
BLAST of CK740263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_OCEIH1.074e-3748.85Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]
TPIS_PSEAE1.074e-3751.25Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEAB1.074e-3751.25Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA81.074e-3751.25Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_VIBSA1.399e-3750.32Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]
TPIS_BACWK1.399e-3747.13Triosephosphate isomerase OS=Bacillus weihenstepha... [more]
TPIS_COLP31.822e-3745.45Triosephosphate isomerase OS=Colwellia psychreryth... [more]
TPIS_PSEPF1.823e-3750.63Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_PELLD1.823e-3747.13Triosephosphate isomerase OS=Pelodictyon luteolum ... [more]
TPIS_CARHZ1.823e-3750.65Triosephosphate isomerase OS=Carboxydothermus hydr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6405 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740263 ID=CK740263; Name=CK740263; organism=Citrus sinensis; type=EST; length=721bp
AAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCT
GATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGT
GAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGG
TCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTC
AATTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCAT
TTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTT
CTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGT
GAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGC
AGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGT
GGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTA
CATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGC
TGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAACTGCAA
GGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTT
CGTTGAACCGGAGTTCATTGACATCATCAATCTGCTGAGCTGAAGTAAAA
TCTTGAGCTTTATTTCAAGGG
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