CK740263 | Citrus Genome Database

Overview


Name	CK740263
Unique Name	CK740263
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	721

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALSV (Triosephosphate isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALPK (Triosephosphate isomerase OS=Salmonella paratyphi A (strain AKU_12601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALPB (Triosephosphate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALPA (Triosephosphate isomerase OS=Salmonella paratyphi A GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALNS (Triosephosphate isomerase OS=Salmonella newport (strain SL254) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALHS (Triosephosphate isomerase OS=Salmonella heidelberg (strain SL476) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALG2 (Triosephosphate isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALEP (Triosephosphate isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SALDC (Triosephosphate isomerase OS=Salmonella dublin (strain CT_02021853) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.565e-36
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 3

Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQN  +   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN + A
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNA 218

HSP 2 Score: 35.4242 bits (80), Expect = 2.565e-36
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC*AE 694
            N  EL AQPD+DG LVGGASL   +    +  AE
Sbjct:  217 NAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250

The following BLAST results are available for this feature:

BLAST of CK740263 vs. ExPASy Swiss-Prot

BLAST of CK740263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
TPIS_SALTY	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella typhimuriu...	[more]
TPIS_SALSV	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella schwarzeng...	[more]
TPIS_SALPK	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella paratyphi ...	[more]
TPIS_SALPB	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella paratyphi ...	[more]
TPIS_SALPA	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella paratyphi ...	[more]
TPIS_SALNS	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella newport (s...	[more]
TPIS_SALHS	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella heidelberg...	[more]
TPIS_SALG2	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella gallinarum...	[more]
TPIS_SALEP	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella enteritidi...	[more]
TPIS_SALDC	2.565e-36	47.80	Triosephosphate isomerase OS=Salmonella dublin (st...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6405 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740263 ID=CK740263; Name=CK740263; organism=Citrus sinensis; type=EST; length=721bp
AAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCT
GATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGT
GAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGG
TCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTC
AATTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCAT
TTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTT
CTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGT
GAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGC
AGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGT
GGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTA
CATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGC
TGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAACTGCAA
GGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTT
CGTTGAACCGGAGTTCATTGACATCATCAATCTGCTGAGCTGAAGTAAAA
TCTTGAGCTTTATTTCAAGGG