CK740263

Overview
NameCK740263
Unique NameCK740263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 7.967e-61
Identity = 103/172 (59.88%), Postives = 125/172 (72.67%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++   +  L P   VAAQNC+    GAFTGEIS  M+ +LG  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A + RIIYGGSV GAT +
Sbjct:   48 YIDFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCK 219          

HSP 2 Score: 43.1282 bits (100), Expect = 7.967e-61
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            CKELA+QPDVDGFLVGGASL
Sbjct:  218 CKELASQPDVDGFLVGGASL 237          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 1.039e-60
Identity = 105/172 (61.05%), Postives = 123/172 (71.51%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++   +  L P   VAAQNC+    GAFTGEIS  M+ +LG  WV+LGHSERR I  ES+E +G KV +ALS+GL VIAC+GE L++REAG T  VV  QTKAIAD V  W  +VLAYEPVWAIGTGK ATP QAQEVH +LR WL  N S  +A  TRIIYGGSV GAT +
Sbjct:   48 YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYGGSVTGATCK 219          

HSP 2 Score: 43.1282 bits (100), Expect = 1.039e-60
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            CKELA+QPDVDGFLVGGASL
Sbjct:  218 CKELASQPDVDGFLVGGASL 237          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 1.354e-60
Identity = 102/172 (59.30%), Postives = 126/172 (73.26%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++   +  L P   VAAQNC+    GAFTGEIS  M+ +LG  WV+LGHSERR +  ES+E +G KV++AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N +  +A +TRIIYGGSV GAT +
Sbjct:   48 YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCK 219          

HSP 2 Score: 43.1282 bits (100), Expect = 1.354e-60
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            CKELA+QPDVDGFLVGGASL
Sbjct:  218 CKELASQPDVDGFLVGGASL 237          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.303e-60
Identity = 102/172 (59.30%), Postives = 124/172 (72.09%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++   +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK I D V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GAT +
Sbjct:   48 YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCK 219          

HSP 2 Score: 43.1282 bits (100), Expect = 2.303e-60
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            CKELA+QPDVDGFLVGGASL
Sbjct:  218 CKELASQPDVDGFLVGGASL 237          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 6.655e-60
Identity = 102/172 (59.30%), Postives = 124/172 (72.09%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++   +  L     VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GAT +
Sbjct:   48 YIDFARQKLDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCK 219          

HSP 2 Score: 43.1282 bits (100), Expect = 6.655e-60
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            CKELA+QPDVDGFLVGGASL
Sbjct:  218 CKELASQPDVDGFLVGGASL 237          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 8.678e-60
Identity = 104/173 (60.12%), Postives = 126/173 (72.83%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L   +S L P+  VAAQNC+    GAFTGEIS  M+ + G+ WVILGHSERR +  ES+E +G KVA+AL  GL VIAC+GE L++REAG T  VV AQTK IAD V  WS +VLAYEPVWAIGTGK A+P QAQEVH +LR+WL  N S  +A + RIIYGGSV G T +
Sbjct:   46 IYLDYARSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCK 218          

HSP 2 Score: 38.891 bits (89), Expect = 8.678e-60
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            CKELA+Q D+DGFLVGGASL
Sbjct:  217 CKELASQKDLDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.131e-59
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L   +  L   F V+AQNC+    GAFTGEIS  M+ + G  WVILGHSERR +  ES+E +G KVA+ALS+ + VI C+GE L+QREAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+WL  N S ++A + RIIYGGSV G T +
Sbjct:   46 IYLDFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCK 218          

HSP 2 Score: 42.3578 bits (98), Expect = 1.131e-59
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            CKEL AQPD+DGFLVGGASL
Sbjct:  217 CKELGAQPDIDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 3.270e-59
Identity = 102/173 (58.96%), Postives = 125/173 (72.25%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L   +  L     VAAQNC+    GAFTGEIS  M+ ++G  WVILGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL ++ S  +A +TRIIYGGSV G   +
Sbjct:   46 IYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCK 218          

HSP 2 Score: 41.9726 bits (97), Expect = 3.270e-59
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NCKELA+Q DVDGFLVGGASL
Sbjct:  216 NCKELASQHDVDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.558e-59
Identity = 102/173 (58.96%), Postives = 122/173 (70.52%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L   +S L     VAAQNC+    GAFTGEIS  M+ + GI WVILGHSERR +  ES+E +G KVA+ L   L VIAC+GE LE+REAG+T DVV  QTK IAD V  W+ +VLAYEPVWAIGTGK A+P QAQEVH +LR WL AN S  +A + RIIYGGSV G   +
Sbjct:   46 IYLDYARSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCK 218          

HSP 2 Score: 43.5134 bits (101), Expect = 5.558e-59
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NCKELAAQ DVDGFLVGGASL
Sbjct:  216 NCKELAAQADVDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.606e-58
Identity = 101/173 (58.38%), Postives = 123/173 (71.10%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L   +  L     ++AQNC+    GAFTGEIS  M+ + G  WVILGHSERR +  E +E +G KVA+ALS+G+ VIAC+GE L+QREAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+W+  N S  +A + RIIYGGSV G T R
Sbjct:   46 IYLDFARQKLDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCR 218          

HSP 2 Score: 41.2022 bits (95), Expect = 1.606e-58
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            C+ELA QPD+DGFLVGGASL
Sbjct:  217 CRELAGQPDIDGFLVGGASL 236          
The following BLAST results are available for this feature:
BLAST of CK740263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BOVIN7.967e-6159.88Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_RAT1.039e-6061.05Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_MOUSE1.354e-6059.30Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_GORGO2.303e-6059.30Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_CANFA6.655e-6059.30Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPISB_DANRE8.678e-6060.12Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_XENTR1.131e-5958.96Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_CHICK3.270e-5958.96Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPISA_DANRE5.558e-5958.96Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_XENLA1.606e-5858.38Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6405 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740263 ID=CK740263; Name=CK740263; organism=Citrus sinensis; type=EST; length=721bp
AAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCT
GATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGT
GAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGG
TCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTC
AATTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCAT
TTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTT
CTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGT
GAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGC
AGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGT
GGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTA
CATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGC
TGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAACTGCAA
GGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTT
CGTTGAACCGGAGTTCATTGACATCATCAATCTGCTGAGCTGAAGTAAAA
TCTTGAGCTTTATTTCAAGGG
back to top