CK740263

Overview
NameCK740263
Unique NameCK740263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.606e-58
Identity = 99/172 (57.56%), Postives = 125/172 (72.67%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            +L   +  + P F VAAQNC+    GAFTGEIS  M+ + G+ WVILGHSERR +  ES+E +G KV++ALS+GL V+AC+GE L++REAG T  VV   T+ IAD V  WS +VLAYEPVWAIGTGK A+P Q+QE+H +LRKWL  N S  +A + RIIYGGSV GAT +
Sbjct:   46 YLDFARLKVDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCK 217          

HSP 2 Score: 41.9726 bits (97), Expect = 1.606e-58
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            CKELA++PDVDGFLVGGASL
Sbjct:  216 CKELASEPDVDGFLVGGASL 235          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.050e-58
Identity = 100/173 (57.80%), Postives = 122/173 (70.52%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L   +S L     VAAQNC+    GAFTGEIS  M+ + G  WVILGHSERR +  E++E +G KVA+AL   L VIAC+GE LE+REAG+T DV+ AQT+ IA+ V  W  +VLAYEPVWAIGTGK ATP QAQEVH +LR W  AN S E++ + RIIYGGSV  A  R
Sbjct:   46 IYLDFARSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKDCGADWVILGHSERRHVFGENDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGSVTAANCR 218          

HSP 2 Score: 41.2022 bits (95), Expect = 6.050e-58
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NC+ELA+Q DVDGFLVGGASL
Sbjct:  216 NCRELASQTDVDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 205.297 bits (521), Expect = 7.888e-58
Identity = 100/172 (58.14%), Postives = 123/172 (71.51%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++   +  L P   VAAQNC+    GAFTGEI   M+ +LG  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  W+ +VLAYEPVWAIGTGK ATP QAQEVH +LR WL  +    +A +TRIIYGGSV GAT +
Sbjct:   48 YIDFARQKLDPKIAVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCK 219          

HSP 2 Score: 38.5058 bits (88), Expect = 7.888e-58
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 2
Query:  596 CKELAAQPDVDGFLVGGASL 655
            CKELA+QPDVDGF V GASL
Sbjct:  218 CKELASQPDVDGFRVSGASL 237          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.873e-57
Identity = 99/177 (55.93%), Postives = 125/177 (70.62%), Query Frame = 3
Query:   81 FLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            F++L  V+ SL  + HVAAQNC+    GAFTGEIS  M+ ++G  WVILGHSERR I NES+E V +KV +AL++GL V+AC+GETL +RE+G T +V   Q  AIA+++ S   W  +V+AYEPVWAIGTGKVA+P QAQEVH  LRKW   NT   +    RIIYGGSV  A  +
Sbjct:   46 FVYLNEVRQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIFNESDELVAEKVQHALAEGLSVVACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCK 222          

HSP 2 Score: 41.2022 bits (95), Expect = 3.873e-57
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NCKELA Q DVDGFLVGGASL
Sbjct:  220 NCKELAQQHDVDGFLVGGASL 240          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 3.874e-57
Identity = 102/174 (58.62%), Postives = 124/174 (71.26%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            ++L  VK+ +  +  VAAQNCW    GAFTGEIS  M+ ++G+ WVILGHSERR I  E +E V +KVA+AL  GLKVIAC+GETLE+RE+G T +VV  Q KA+   +   W NIVLAYEPVWAIGTGK ATP QAQ+VH  LR WL AN S  ++ A RI YGGSV  A A+
Sbjct:   45 IYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAK 218          

HSP 2 Score: 35.4242 bits (80), Expect = 3.874e-57
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N KELA+  D+DGFLVGGASL
Sbjct:  216 NAKELASCKDIDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.241e-56
Identity = 108/172 (62.79%), Postives = 127/172 (73.84%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  ES+E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S +++A+ RI YGGSV  A  R
Sbjct:   28 YLTLARSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCR 199          

HSP 2 Score: 23.0978 bits (48), Expect = 3.241e-56
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  593 NCKELAAQPD 622
            NC+ELAA+PD
Sbjct:  197 NCRELAAKPD 206          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.587e-55
Identity = 97/176 (55.11%), Postives = 123/176 (69.89%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            +FL  ++ SL+ + HVAAQNC+    GAFTGEIS  M+ ++G  WVILGHSERR I  ES+E + +KV +AL++GL VIAC+GETL +RE+  T +V   Q KAIA+++ S   W  +V+AYEPVWAIGTGKVATP QAQEVH  LRKW   N    +    RIIYGGSV  A  +
Sbjct:   47 VFLHEIRKSLKKEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGSVTAANCK 222          

HSP 2 Score: 41.2022 bits (95), Expect = 1.587e-55
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NCKELA Q DVDGFLVGGASL
Sbjct:  220 NCKELAQQHDVDGFLVGGASL 240          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 201.06 bits (510), Expect = 2.697e-55
Identity = 96/176 (54.55%), Postives = 123/176 (69.89%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATARNWL 611
            ++L   +  ++ D  V AQN + KK GA+TGE SA+ L++ GI + + GHSERR I  ES+EFV DK  +AL QGL V+AC+GETL +REA  T++VV  Q  AIAD+V +WS IV+AYEPVWAIGTGK ATP QAQEVH E+RKW        +A   R+IYGGSVNG   + +L
Sbjct:   46 MYLITTRQQVKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFL 221          

HSP 2 Score: 34.2686 bits (77), Expect = 2.697e-55
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NCKE     D+DGFLVGGASL
Sbjct:  216 NCKEFLKFHDIDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.517e-55
Identity = 99/204 (48.53%), Postives = 134/204 (65.69%), Query Frame = 3
Query:    3 VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLI--LNESNEFVGDKVAYALSQG-LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATARN 605
            + ++VS  N                  ++L   + +LR DF  +AQN W+ KGGAFTGE+ A M+ ++G  WVILGHSERR I  L ES+  +  K AYAL    L VI C+GE LE+RE+G T+ V   Q +A++D +S WS++V+AYEPVWAIGTGKVATP QA++VH  +R WL  N SP++AA+TRI+YGGSV+ A   +
Sbjct:   11 IAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCES 214          

HSP 2 Score: 38.5058 bits (88), Expect = 3.517e-55
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSL 670
            NC+ LA QP++DGFLVGGAS+  + L
Sbjct:  211 NCESLAKQPNIDGFLVGGASMKPTFL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.596e-55
Identity = 105/172 (61.05%), Postives = 124/172 (72.09%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  ES E + DK+ +AL++GLKVIAC+GETL++REA  T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S ++++A RI YGGSV  A  R
Sbjct:   28 YLSLARSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCR 199          

HSP 2 Score: 23.0978 bits (48), Expect = 4.596e-55
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  593 NCKELAAQPD 622
            NC+ELAA+PD
Sbjct:  197 NCRELAAKPD 206          
The following BLAST results are available for this feature:
BLAST of CK740263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_LATCH1.606e-5857.56Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_ORYLA6.050e-5857.80Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_PIG7.888e-5858.14Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_SCHJA3.873e-5755.93Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_BOMMO3.874e-5758.62Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_AEDTO3.241e-5662.79Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_SCHMA1.587e-5555.11Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_SCHPO2.697e-5554.55Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_GRAVE3.517e-5548.53Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_CULPI4.596e-5561.05Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6405 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740263 ID=CK740263; Name=CK740263; organism=Citrus sinensis; type=EST; length=721bp
AAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCT
GATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGT
GAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGG
TCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTC
AATTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCAT
TTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTT
CTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGT
GAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGC
AGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGT
GGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTA
CATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGC
TGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAACTGCAA
GGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTT
CGTTGAACCGGAGTTCATTGACATCATCAATCTGCTGAGCTGAAGTAAAA
TCTTGAGCTTTATTTCAAGGG
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