CK740263

Overview
NameCK740263
Unique NameCK740263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:126..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.701e-51
Identity = 95/171 (55.56%), Postives = 117/171 (68.42%), Query Frame = 3
Query:   87 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            +L   KS L+    VAAQNC+    GAFTGEIS  M+ +LG+ WVILGHSERR +  ES+  + +K  +AL  G+KV+ C+GE LE+REAG T DV   Q +AI D+  SW NIV+AYEPVWAIGTGK A+  QAQEVH  +R +L    SP +A ATRIIYGGSV    A
Sbjct:   46 YLAYAKSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNA 216          

HSP 2 Score: 35.4242 bits (80), Expect = 1.701e-51
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N  EL  +PD+DGFLVGGASL
Sbjct:  215 NAAELGKKPDIDGFLVGGASL 235          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.409e-50
Identity = 90/161 (55.90%), Postives = 118/161 (73.29%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATARN 605
            VAAQN + K+ GAFTGEIS + + + GIP+VILGHSERR + +E++E V  K   AL  GLKVI C+GETL++RE G T  V   Q  A+  ++    WSNIV+AYEPVWAIGTGKVAT +QAQE H ++RK+L    SP++A+ TR+IYGGSVN A +++
Sbjct:   61 VAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKD 221          

HSP 2 Score: 36.965 bits (84), Expect = 2.409e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N K+LA+Q D+DGFLVGGASL
Sbjct:  218 NSKDLASQQDIDGFLVGGASL 238          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.140e-50
Identity = 96/202 (47.52%), Postives = 124/202 (61.39%), Query Frame = 3
Query:    3 VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            +  I+  LNE +              +L L    +  +    V++QN + K  GAFTGEIS   L +  IPW I+GHSERR+IL E++EF+  KV  A+  G+ VI C+GETLE+REA  T++VV  Q  A A  ++   WS +V+AYEPVWAIGTGKVAT  QAQEVH  +RKWL    SPE +  TRIIYGGSV+    R
Sbjct:   20 ITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCR 221          

HSP 2 Score: 38.891 bits (89), Expect = 3.140e-50
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NC+ELA + DVDGFLVGGASL
Sbjct:  219 NCRELAQERDVDGFLVGGASL 239          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.064e-50
Identity = 94/170 (55.29%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   84 LFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVN 587
            L+L   +     +  VAAQN + K  GAFTGEIS + L    I W ILGHSERR+IL E++EF+  K   A+  GL+VI C+GETLE+REA  T+DVV  Q  A A  +S   W+ +V+AYEPVWAIGTGKVAT  QAQEVH  +RKWL    S E A  TRIIYGGSV+
Sbjct:   45 LYLLQAREVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVS 214          

HSP 2 Score: 38.891 bits (89), Expect = 9.064e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            NCK+LA + D+DGFLVGGASL
Sbjct:  217 NCKDLAKEADIDGFLVGGASL 237          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.540e-49
Identity = 98/177 (55.37%), Postives = 124/177 (70.06%), Query Frame = 3
Query:   81 FLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            FL + + K+ L  P F +AAQN  + + GAFTGE+S ++L + GI WV+LGHSERRL   E+NE V +KVA A + G  VI CVGET E+REAG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVATP QAQEVH  LR+W+ +    +IAA  RI+YGGSV    AR
Sbjct:   46 FLHIPMTKARLTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNAR 221          

HSP 2 Score: 27.7202 bits (60), Expect = 1.540e-49
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N + L    D++GFLVGGASL
Sbjct:  219 NARTLYQMRDINGFLVGGASL 239          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.007e-49
Identity = 93/177 (52.54%), Postives = 122/177 (68.93%), Query Frame = 3
Query:   81 FLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            F+ L + K  L  P F +AAQN  + K GAFTGE+S  +L + G+ W++LGHSERR    E+NE V DKVA A++ G  VIAC+GETL++RE+G T  VV  Q  AIA ++  + W+ +V+AYEPVWAIGTGKVATP QAQE H  +R W+ +    ++A   RI+YGGSVNG  AR
Sbjct:   45 FVHLAMTKERLSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNAR 220          

HSP 2 Score: 30.0314 bits (66), Expect = 2.007e-49
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N + L  Q DV+GFLVGGASL
Sbjct:  218 NARTLYQQRDVNGFLVGGASL 238          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.410e-49
Identity = 96/199 (48.24%), Postives = 124/199 (62.31%), Query Frame = 3
Query:    3 VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            V KIV  LN+ +              ++ L  V  + +    V+AQNC+ K  GA+TGEIS E + +LG  W + GHSERR I+ ES++F+  K  +AL QGL VI C+GETLE+R+A  T+DV A Q  A+A  VS WS IV+AYEPVWAIGTG  ATP  AQE H  +R+ L  +   + A  TRI+YGGSVNG  A
Sbjct:   20 VSKIVDGLNKAELPSNVEVVIAPPAPYIALA-VNENKQKTIEVSAQNCFDKASGAYTGEISPEQIKDLGATWTLTGHSERRTIIKESDDFIASKTKFALDQGLSVILCIGETLEERKANVTLDVCARQLDAVARVVSDWSKIVVAYEPVWAIGTGLAATPEDAQETHKAIREHLSKSIGADAAEKTRILYGGSVNGKNA 217          

HSP 2 Score: 30.4166 bits (67), Expect = 3.410e-49
Identity = 14/21 (66.67%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N  E   + DVDGFLVGGASL
Sbjct:  216 NAPEFKDKADVDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.843e-49
Identity = 93/201 (46.27%), Postives = 127/201 (63.18%), Query Frame = 3
Query:    3 VKKIVSVLNEGQXXXXXXXXXXXXXXFL--FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            +K+IV  LN  +              +L   + LVK S      V AQN ++K  GAFTGE S + + ++G  WVILGHSERR    E ++ + +K A+ALSQG+ VI C+GETL+Q++AG+T+ VV  Q +A+ D+V  WSN+V+AYEPVWAIGTG  ATP  AQE+H  +R++L      + A  TRI+YGGS NG  A
Sbjct:   20 IKEIVERLNNAKLDPKVEVVLCPPAPYLDYTVSLVKKS---QVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNA 217          

HSP 2 Score: 30.8018 bits (68), Expect = 9.843e-49
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  614 QPDVDGFLVGGASL 655
            +PDVDGFLVGGASL
Sbjct:  223 KPDVDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 4.826e-48
Identity = 90/176 (51.14%), Postives = 121/176 (68.75%), Query Frame = 3
Query:   84 LFLGL-VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATARNW 608
            L+LGL V+ + +P   + AQN + K  GAFTGE  A  ++++G  W + GHSERR I+ ES+EF+ +K  +AL  G+KVI C+GETLE+R+ G T+DV A Q  A++  VS WSNIV+AYEPVWAIGTG  ATP  A+E H  +R  L  +   E A  TRI+YGGSVNG  A+++
Sbjct:   45 LYLGLAVEQNKQPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVSDWSNIVVAYEPVWAIGTGLAATPEDAEETHKGIRAHLAKSIGAEQAEKTRILYGGSVNGKNAKDF 220          

HSP 2 Score: 29.6462 bits (65), Expect = 4.826e-48
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N K+   + +VDGFLVGGASL
Sbjct:  216 NAKDFKDKANVDGFLVGGASL 236          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.815e-47
Identity = 91/201 (45.27%), Postives = 127/201 (63.18%), Query Frame = 3
Query:    3 VKKIVSVLNEGQXXXXXXXXXXXXXXFL--FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            +K+IV  LN                 +L   + LVK   +P   V AQN ++K  GAFTGE S + + ++G  WVILGHSERR   +E ++F+ DK  +AL QG+ VI C+GETLE+++AG T+DVV  Q  A+ + V  W+N+V+AYEPVWAIGTG  ATP  AQ++H  +RK+L +    + A+  RI+YGGS NG+ A
Sbjct:   20 IKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNA 217          

HSP 2 Score: 27.7202 bits (60), Expect = 1.815e-47
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  620 DVDGFLVGGASL 655
            DVDGFLVGGASL
Sbjct:  225 DVDGFLVGGASL 236          
The following BLAST results are available for this feature:
BLAST of CK740263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CAEEL1.701e-5155.56Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_COPC72.409e-5055.90Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_ASPOR3.140e-5047.52Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_EMENI9.064e-5055.29Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_TRYCR1.540e-4955.37Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_TRYBB2.007e-4952.54Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_DEBHA3.410e-4948.24Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_ZYGBA9.843e-4946.27Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_CANAL4.826e-4851.14Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_YEAST1.815e-4745.27Triosephosphate isomerase OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6405 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740263 ID=CK740263; Name=CK740263; organism=Citrus sinensis; type=EST; length=721bp
AAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCT
GATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGT
GAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGG
TCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTC
AATTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCAT
TTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTT
CTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGT
GAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGC
AGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGT
GGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTA
CATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGC
TGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAACTGCAA
GGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTT
CGTTGAACCGGAGTTCATTGACATCATCAATCTGCTGAGCTGAAGTAAAA
TCTTGAGCTTTATTTCAAGGG
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