CK740263

Overview
NameCK740263
Unique NameCK740263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.837e-41
Identity = 82/159 (51.57%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            V A+NC  K+ GA+TGE+SA M+ + G  +VILGHSERR    E+ E + DKV  AL+ GL  I C+GE LE+REA    +VVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  +      EIA  T I+YGGS   + A+
Sbjct:   62 VGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAK 220          

HSP 2 Score: 33.8834 bits (76), Expect = 3.837e-41
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N KEL A PDVDG L+GGA+L
Sbjct:  218 NAKELFANPDVDGGLIGGAAL 238          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.837e-41
Identity = 84/158 (53.16%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            + AQNC  +  GAFTGE+SA M+   G   VI GHSERR    E+N  V  KV +ALS+GL+VI C GETLEQRE G T DVV AQ +     +   SNIV+AYEPVWAIGTGK AT  QA+EVH  +R  +      E A   RI YGGSV  + A+
Sbjct:   61 LVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAK 218          

HSP 2 Score: 34.6538 bits (78), Expect = 3.837e-41
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSI 682
            N KEL + P++DG L+GGASLN +   + +
Sbjct:  216 NAKELFSMPNIDGGLIGGASLNAADFVAIV 245          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.999e-41
Identity = 84/160 (52.50%), Postives = 111/160 (69.38%), Query Frame = 3
Query:  129 VAAQNCWVKKG-GAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            V AQ+C ++ G GA TGE+SA+ LV+LG  WV++GHSERRL+L E++E V  K A A + GLK + C+GETLE+REAG T++VVA Q   + D   V ++ + V+AYEPVWAIG+G  ATP QAQEVH  +R  L A +   IA   R++YGGSV    A
Sbjct:   60 VGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQL-ARSDRRIAEGVRLLYGGSVKADNA 218          

HSP 2 Score: 30.0314 bits (66), Expect = 4.999e-41
Identity = 16/31 (51.61%), Postives = 18/31 (58.06%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            N  EL A  D+DG LVGGASL       +IC
Sbjct:  217 NAAELFAMADIDGGLVGGASLKADEF-GAIC 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.106e-40
Identity = 85/158 (53.80%), Postives = 105/158 (66.46%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            +AAQNC  +  GAFTGE+S  ML   G  +VILGHSERR +  E+NE V  KV  AL++GL+VI CVGETL++REAG T  +V AQ  + +AD VS  S +V+AYEPVWAIGTGK AT  QAQ+VH  +R  +        A   RI YGGSV  + A
Sbjct:   62 LAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLAD-VSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNA 218          

HSP 2 Score: 32.3426 bits (72), Expect = 1.106e-40
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N  EL A PD+DG L+GGASL
Sbjct:  217 NAAELFAMPDIDGGLIGGASL 237          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.412e-40
Identity = 80/175 (45.71%), Postives = 118/175 (67.43%), Query Frame = 3
Query:   81 FLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            F +L   +S++     + +QN   ++ GAFTGE+SA ML  +G  +VI+GHSERR +  E++  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D   V++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++L A   P+IA + R++YGGSV    A
Sbjct:   42 FPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQFL-AKDDPDIAQSLRLLYGGSVKADNA 215          

HSP 2 Score: 29.6462 bits (65), Expect = 5.412e-40
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            N   L AQ D+DG L+GGASL   S   +IC
Sbjct:  214 NAALLFAQSDIDGGLIGGASLTADSFI-AIC 243          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.048e-40
Identity = 82/157 (52.23%), Postives = 102/157 (64.97%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            + AQNC  +  GA+TGE+SA ML   G   VI+GHSERR    E+N  V  +V  AL++GL VI CVGETL +RE+G T D+V+AQ +     VS  SN+V+AYEPVWAIGTGK AT AQA+EVH  +R  +        A A RI YGGSV  + A
Sbjct:   62 LVAQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGSVKPSNA 218          

HSP 2 Score: 33.113 bits (74), Expect = 7.048e-40
Identity = 14/30 (46.67%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSI 682
            N  EL A P++DG L+GGASLN +   + +
Sbjct:  217 NAVELFAMPNIDGGLIGGASLNAADFVAIV 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.983e-40
Identity = 82/159 (51.57%), Postives = 109/159 (68.55%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGA 593
            +AAQN +++  GA+TGE S EML+++G+  VI+GHSERR I+ E+NE    K   AL +G+ VI C GETL++R+A +TM+V  AQ +A+   +      W N+V+AYEPVW+IGTG VATP QA+EVH  LRKW       E A   RIIYGGS NG+
Sbjct:   62 IAAQNVYLEGNGAWTGETSVEMLLDMGLSHVIIGHSERRRIMGETNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGS 220          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.197e-39
Identity = 79/160 (49.38%), Postives = 107/160 (66.88%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            VAA+NC  K+ GA+TGE+SA M+ + G  +VI+GHSERR   +E++  + +KV  ALS GL  I CVGE LE+REAG   +VVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N A A+
Sbjct:   62 VAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAK 221          

HSP 2 Score: 31.5722 bits (70), Expect = 1.197e-39
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLN 658
            N KEL ++ DVDG L+GGASL+
Sbjct:  219 NAKELFSRADVDGGLIGGASLS 240          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.197e-39
Identity = 79/160 (49.38%), Postives = 107/160 (66.88%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            VAA+NC  K+ GA+TGE+SA M+ + G  +VI+GHSERR   +E++  + +KV  ALS GL  I CVGE LE+REAG   +VVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N A A+
Sbjct:   62 VAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAK 221          

HSP 2 Score: 31.5722 bits (70), Expect = 1.197e-39
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLN 658
            N KEL ++ DVDG L+GGASL+
Sbjct:  219 NAKELFSRADVDGGLIGGASLS 240          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.197e-39
Identity = 82/154 (53.25%), Postives = 100/154 (64.94%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSV 584
            + AQN      GAFTGEISA ML   G    I+GHSERRL+  ESNE V  +   A+   LK I CVGETLEQRE G T+ V+ AQ   + +   V S  + V+AYEPVWA+GTG+ AT  QAQEVH+ +R  L A  +PE+A A +IIYGGSV
Sbjct:   60 LGAQNVADHNSGAFTGEISAGMLREFGCELAIVGHSERRLLYGESNELVASRYEQAIQGHLKPILCVGETLEQREQGRTLAVIGAQIDTVFEFAGVQSLEHAVIAYEPVWAVGTGRSATTGQAQEVHYHIRS-LIARWNPEVAQAVQIIYGGSV 212          

HSP 2 Score: 33.4982 bits (75), Expect = 1.197e-39
Identity = 17/31 (54.84%), Postives = 21/31 (67.74%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            N  EL A PD+DG L+GGASL+  +   SIC
Sbjct:  216 NSAELFAMPDIDGGLIGGASLDARAFL-SIC 245          
The following BLAST results are available for this feature:
BLAST of CK740263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACFN3.837e-4151.57Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_CHLPD3.837e-4153.16Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_PSEU54.999e-4152.50Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_CHLP81.106e-4053.80Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_ALCBS5.412e-4045.71Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_CHLCH7.048e-4052.23Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPI2_GIALA8.983e-4051.57Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_PORGI1.197e-3949.38Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG31.197e-3949.38Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_METCA1.197e-3953.25Triosephosphate isomerase OS=Methylococcus capsula... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6405 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740263 ID=CK740263; Name=CK740263; organism=Citrus sinensis; type=EST; length=721bp
AAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCT
GATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGT
GAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGG
TCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTC
AATTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCAT
TTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTT
CTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGT
GAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGC
AGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGT
GGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTA
CATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGC
TGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAACTGCAA
GGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTT
CGTTGAACCGGAGTTCATTGACATCATCAATCTGCTGAGCTGAAGTAAAA
TCTTGAGCTTTATTTCAAGGG
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