CK740263

Overview
NameCK740263
Unique NameCK740263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAA (Triosephosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tpiA PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.626e-39
Identity = 77/154 (50.00%), Postives = 99/154 (64.29%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSV 584
            + AQN + +  GAFTGE+S  MLV++G  +VI+GHSERR    ES+ FV  K+  AL+ GL+ I CVGE+  QR+AG    +V AQ +A    V     +N+V+AYEP+WAIGTG  ATPA AQ +H  +R  L      EIAA  RI YGGSV
Sbjct:   61 LGAQNLYPEAQGAFTGEVSPPMLVDIGCRYVIIGHSERRQYFGESDAFVNRKLRAALAHGLRPIVCVGESKPQRDAGQAEPIVTAQVRAALLEVPPDQMANVVIAYEPIWAIGTGDTATPADAQAMHAAIRATLAELYGSEIAATVRIQYGGSV 214          

HSP 2 Score: 36.5798 bits (83), Expect = 7.626e-39
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSS 667
            N  EL AQPD+DG LVGGASL  +S
Sbjct:  218 NIDELMAQPDIDGALVGGASLQAAS 242          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.197e-38
Identity = 78/160 (48.75%), Postives = 103/160 (64.38%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            VAA+NC  K+ GA+TGE+SA M+ + G  +VILGHSERR   +E+ E +  KV  AL+ GL  I C+GE LE+REAG   +VV AQ       +S+  +  I+LAYEPVWAIGTGK A+  QA+E+H  +R  L A    E+A    I+YGGS N   A+
Sbjct:   62 VAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIRATLAAKYGNEVADNCTILYGGSCNAGNAK 221          

HSP 2 Score: 33.4982 bits (75), Expect = 2.197e-38
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N KEL A+P+VDG L+GGASL
Sbjct:  219 NAKELFAKPNVDGGLIGGASL 239          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PELPD (Triosephosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.862e-38
Identity = 80/157 (50.96%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  120 DFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVS-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSV 584
            D  +AAQ+C+ ++ GAFTGE+S   L + G   VI+GHSERR +  E++E V  K   A++ GL  I CVGET+E+RE+ +T  VV  Q T A+A  +S  +S IV+AYEPVWAIGTGK AT  QAQEVH  +R  +  + S  IA + RI+YGGSV
Sbjct:   58 DIGLAAQDCFWEEQGAFTGEVSPAQLRDAGCSHVIIGHSERRQLFGETDEGVNRKARAAVAVGLTAIICVGETMEERESRATFTVVGRQVTAALAGFLSHEFSRIVIAYEPVWAIGTGKTATDQQAQEVHCYIRNLVTMSISQAIADSLRILYGGSV 214          

HSP 2 Score: 35.4242 bits (80), Expect = 2.862e-38
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSI 682
            N + L AQPD+DG L+GGASL  +S    +
Sbjct:  218 NIRGLMAQPDIDGALIGGASLKAASFAEMV 247          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.890e-38
Identity = 81/169 (47.93%), Postives = 110/169 (65.09%), Query Frame = 3
Query:   99 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGA 593
            + ++      +AAQN +++  GA+TGE S EML ++G+  VI+GHSERR I+ E++E    K   AL +G+ VI CVGETL++R+A  TM+V  AQ +A+   +      W  +V+AYEPVW+IGTG VATP QA+EVH  LRKW       E A   RIIYGGS NG+
Sbjct:   52 IAANTSKQLRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGS 220          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPW (Triosephosphate isomerase OS=Pseudomonas putida (strain W619) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.729e-38
Identity = 75/160 (46.88%), Postives = 107/160 (66.88%), Query Frame = 3
Query:  129 VAAQNCWVK-KGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            V AQN  V+ + GA TGE++   L  +G  +V++GHSERR ++ ES E +  K A A   GL  + C+GETLE+REAG T++VV  Q  ++ D   +++++N V+AYEPVWAIGTG  A+P QAQ+VH  +RK L A  + E+A   +++YGGSV  A A
Sbjct:   60 VGAQNSAVQPEQGALTGEVAPSQLAEVGCKFVLIGHSERRQVIGESEEVLNRKFAAAQKSGLTPVLCIGETLEEREAGKTLEVVGRQLSSVIDAFGIAAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLAAKDA-EVAQNVQLLYGGSVKAANA 218          

HSP 2 Score: 34.2686 bits (77), Expect = 3.729e-38
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            K  N  EL   PD+DG L+GGASLN      +IC
Sbjct:  214 KAANAAELFGMPDIDGGLIGGASLNADEF-GAIC 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA7 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.329e-38
Identity = 83/160 (51.88%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  129 VAAQNCWVKK-GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            V AQN  V+   GA TGEI+   L + G   V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGSV  A+A
Sbjct:   60 VGAQNSAVEPMQGALTGEIAPSQLADAGCGMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASA 218          

HSP 2 Score: 32.7278 bits (73), Expect = 6.329e-38
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            K  +  EL   PD+DG LVGGASLN      +IC
Sbjct:  214 KAASAAELFGMPDIDGGLVGGASLNADEF-GAIC 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PSEE4 (Triosephosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.329e-38
Identity = 76/161 (47.20%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  126 HVAAQNCWVK-KGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATA 599
            +V AQN  V+ + GA TGE++   L  +G  +V++GHSERR I+ ES+E +  K A A   GL  + C+GETL +REAG T+ VV  Q  ++ D   + +++N V+AYEPVWAIGTG  A+P QAQ+VH  +RK L A    E+AA  +++YGGSV  A A
Sbjct:   59 NVGAQNSAVQPEQGALTGEVAPSQLAEVGCKYVLVGHSERRQIIGESDEVLNQKFAAAQKSGLTPVLCIGETLAEREAGETLKVVGRQLSSVIDAFGIKAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQL-AAMDAEVAANVQLLYGGSVKAANA 218          

HSP 2 Score: 34.2686 bits (77), Expect = 6.329e-38
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  584 KWCNCKELAAQPDVDGFLVGGASLNRSSLTSSIC 685
            K  N  EL   PD+DG L+GGASLN      +IC
Sbjct:  214 KAANAAELFGMPDIDGGLIGGASLNADEF-GAIC 246          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.244e-38
Identity = 78/171 (45.61%), Postives = 108/171 (63.16%), Query Frame = 3
Query:   81 FLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSV 584
            F  L  V ++L + D  VAAQNC+ +  GAFTGE+S  +L + G  +VI+GHSERR +  ES+ F+  KV   +  GL  I C+GETLE+REA  T DV+  Q +   + +  ++   IV+AYEPVWAIGTGK AT +QAQ+ H  +R  +      ++A   RI+YGGSV
Sbjct:   44 FTSLAAVIATLEKSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIRSLVNDIFGSKVAQQVRIVYGGSV 214          

HSP 2 Score: 32.7278 bits (73), Expect = 8.244e-38
Identity = 15/22 (68.18%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLN 658
            N   L  QPD+DG LVGGASLN
Sbjct:  218 NVDGLLQQPDIDGALVGGASLN 239          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.246e-38
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATAR 602
            V+AQN    +GGAFTGEISA+ML ++G+  VILGHSERR I +E++  + +KV  AL   + VI C GE L+ R++G+  ++V  Q +     ++  SWS IVLAYEPVWAIGTG+ A+P QAQE+H  +R+ +      EIA    I+YGGSV    A+
Sbjct:   61 VSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTALKHDMTVIFCFGEELKDRQSGNHFNIVENQLRDGVFHIAKESWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIRKAFGAEIADEVSILYGGSVKPENAK 220          

HSP 2 Score: 32.3426 bits (72), Expect = 8.246e-38
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASL 655
            N KE+ ++PDVDG L+GGA+L
Sbjct:  218 NAKEIFSKPDVDGGLIGGAAL 238          
BLAST of CK740263 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 8.247e-38
Identity = 82/163 (50.31%), Postives = 101/163 (61.96%), Query Frame = 3
Query:  129 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGATARNWL 611
            + AQ+    + GA+TGE+S  ML      +VI+GHSERR    E+NE +  K   AL+ GL  I CVGETL+QREAG T  VVA Q   +   +  S  + IV+AYEPVWAIGTGK ATPA AQEVH  LRK L A  + E A   RI+YGGS+    A+  L
Sbjct:   60 LGAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAKNA-EAAMQVRILYGGSMKPENAKELL 221          

HSP 2 Score: 31.187 bits (69), Expect = 8.247e-38
Identity = 13/30 (43.33%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  593 NCKELAAQPDVDGFLVGGASLNRSSLTSSI 682
            N KEL A  D+DG L+GGA+L  +   + +
Sbjct:  216 NAKELLAMSDIDGGLIGGAALKAADFLAIV 245          
The following BLAST results are available for this feature:
BLAST of CK740263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLAA7.626e-3950.00Triosephosphate isomerase OS=Chloroflexus aurantia... [more]
TPIS_PARD82.197e-3848.75Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_PELPD2.862e-3850.96Triosephosphate isomerase OS=Pelobacter propionicu... [more]
TPI1_GIALA2.890e-3847.93Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_PSEPW3.729e-3846.88Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEA76.329e-3851.88Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEE46.329e-3847.20Triosephosphate isomerase OS=Pseudomonas entomophi... [more]
TPIS_PELCD8.244e-3845.61Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_FLAJ18.246e-3848.13Triosephosphate isomerase OS=Flavobacterium johnso... [more]
TPIS_JANMA8.247e-3850.31Triosephosphate isomerase OS=Janthinobacterium sp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6405 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740263 ID=CK740263; Name=CK740263; organism=Citrus sinensis; type=EST; length=721bp
AAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCT
GATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGT
GAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGG
TCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTC
AATTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCAT
TTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTT
CTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGT
GAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGC
AGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGT
GGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTA
CATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGC
TGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAACTGCAA
GGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTT
CGTTGAACCGGAGTTCATTGACATCATCAATCTGCTGAGCTGAAGTAAAA
TCTTGAGCTTTATTTCAAGGG
back to top