CK740270

Overview
NameCK740270
Unique NameCK740270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length372
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:638..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.550e-43
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 252
            GEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  182 GEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.550e-43
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 252
            GEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  185 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.550e-43
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 252
            GEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  184 GEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.247e-42
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 252
            GEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  183 GEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.247e-42
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 252
            GEV DPLYPGGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  183 GEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.247e-42
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 249
            GEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  179 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.629e-42
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 252
            GEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  184 GEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.629e-42
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 252
            GEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  184 GEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.629e-42
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 252
            GEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  184 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of CK740270 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.128e-42
Identity = 78/84 (92.86%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    1 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 252
            GEVTDP+YPGG+FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 GEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
The following BLAST results are available for this feature:
BLAST of CK740270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2A_SOLLC9.550e-4396.43Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB28_PEA9.550e-4395.24Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PETSP9.550e-4396.43Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB25_NICPL1.247e-4295.24Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_PETSP1.247e-4296.43Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_MAIZE1.247e-4296.39Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC1.629e-4295.24Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.629e-4295.24Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL1.629e-4296.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY2.128e-4292.86Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6413 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740270 ID=CK740270; Name=CK740270; organism=Citrus sinensis; type=EST; length=372bp
GGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGG
TTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCA
AGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCC
ATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGA
CCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAA
AGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATC
ATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTAT
TTATAAAATGCTTCAATTTGAT
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