CK740274 | Citrus Genome Database

Overview


Name	CK740274
Unique Name	CK740274
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	515

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA1_SOLLC (Catalase isozyme 1 OS=Solanum lycopersicum GN=CAT1 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.578e-65
Identity = 100/134 (74.63%), Postives = 113/134 (84.33%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPGIYYS DKLLQTRIF+YADTQRHR+GPNY+QLPVNAPKC  HNNH DG MN  HRDEE+DY PSR+DP R AE +P P  +  GRR  C+IPKENNFKQ GERYRSW PDRQ+R+I +WV++LSDPRVTHEI
Sbjct:  330 VPGIYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCGHHNNHRDGAMNMTHRDEEVDYLPSRFDPCRPAEQYPIPSCVLNGRRTNCVIPKENNFKQAGERYRSWEPDRQDRYINKWVESLSDPRVTHEI 463

HSP 2 Score: 41.9726 bits (97), Expect = 2.578e-65
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCP 65
            LVLN+NIDNFFAENEQLAF P
Sbjct:  306 LVLNRNIDNFFAENEQLAFNP 326

HSP 3 Score: 21.9422 bits (45), Expect = 2.578e-65
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISY SQA
Sbjct:  464 RSIWISYLSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_IPOBA (Catalase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 5.967e-65
Identity = 100/134 (74.63%), Postives = 118/134 (88.06%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPGIY+S+DK+LQ R+F+YADT RHRLGPNY+ LPVNAPKCA HNN YDG+MNF+HRDEE+DYFPS++D  R+AE  PTP  I  G+R+KC+I KENNFKQPG+RYRSWAPDRQ+RFI RWV ALS+PRVTHEI
Sbjct:  330 VPGIYFSDDKMLQARVFAYADTHRHRLGPNYMLLPVNAPKCAHHNNSYDGYMNFVHRDEEVDYFPSKFDNTRNAERFPTPLRIVTGQRDKCVIEKENNFKQPGDRYRSWAPDRQDRFINRWVKALSEPRVTHEI 463

HSP 2 Score: 39.6614 bits (91), Expect = 5.967e-65
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPA 68
            +VLNKNIDNFFAENE LA  PA
Sbjct:  306 MVLNKNIDNFFAENEMLAMDPA 327

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA2_SOLTU (Catalase isozyme 2 OS=Solanum tuberosum GN=CAT2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.256e-64
Identity = 99/134 (73.88%), Postives = 112/134 (83.58%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPGIYYS DKLLQTRIF+YADTQRHR+GPNY+QLPVNAPKC  HNNH DG MN  HRDEE+DY PSR+DP R AE +P P  +  GRR  C+IPKENNFKQ GERYRSW  DRQ+R+I +WV++LSDPRVTHEI
Sbjct:  330 VPGIYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCGHHNNHRDGAMNMTHRDEEVDYLPSRFDPCRPAEQYPIPACVLNGRRTNCVIPKENNFKQAGERYRSWESDRQDRYITKWVESLSDPRVTHEI 463

HSP 2 Score: 41.9726 bits (97), Expect = 1.256e-64
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCP 65
            LVLN+NIDNFFAENEQLAF P
Sbjct:  306 LVLNRNIDNFFAENEQLAFNP 326

HSP 3 Score: 21.9422 bits (45), Expect = 1.256e-64
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISY SQA
Sbjct:  464 RSIWISYLSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA1_SOLTU (Catalase isozyme 1 OS=Solanum tuberosum GN=CAT1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.609e-64
Identity = 99/134 (73.88%), Postives = 112/134 (83.58%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPGIYYS DKLLQTRIF+YADTQRHR+GPNY+QLPVNAPKC  HNNH DG MN  HRDEE+DYFPSR+DP R AE +P P  +  GRR  C+IPKENN KQ GERYRSW  DRQ+R+I +WV++LSDPRVTHEI
Sbjct:  330 VPGIYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCGHHNNHRDGAMNMTHRDEEVDYFPSRFDPCRPAEQYPIPACVLNGRRTNCVIPKENNSKQAGERYRSWESDRQDRYINKWVESLSDPRVTHEI 463

HSP 2 Score: 41.9726 bits (97), Expect = 3.609e-64
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCP 65
            LVLN+NIDNFFAENEQLAF P
Sbjct:  306 LVLNRNIDNFFAENEQLAFNP 326

HSP 3 Score: 21.9422 bits (45), Expect = 3.609e-64
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISY SQA
Sbjct:  464 RSIWISYLSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA3_CUCPE (Catalase isozyme 3 OS=Cucurbita pepo GN=CAT3 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 9.240e-63
Identity = 104/145 (71.72%), Postives = 125/145 (86.21%), Query Frame = 1

Query:   46 NSLLSALLLWVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKE-NNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            N +L+  +  VPGI+YS+DK+LQ R F+YADTQRHRLGPNYLQLPVNAPKC  HNNH++GFMNFMHRDEE++YFPSRYDP RHAE  P PP +  G+RE+C+IPKE NNFKQ G+RYRSWAPDRQ+RF+ R+V+ALSDPRVT E+
Sbjct:  319 NEMLAFSMSLVPGIHYSDDKMLQARSFAYADTQRHRLGPNYLQLPVNAPKCPHHNNHHEGFMNFMHRDEEVNYFPSRYDPCRHAEKFPMPPNVLTGKRERCVIPKENNNFKQAGDRYRSWAPDRQDRFVKRFVEALSDPRVTDEV 463

HSP 2 Score: 27.7202 bits (60), Expect = 9.240e-63
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R+IWISYWSQA
Sbjct:  464 RNIWISYWSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA2_CUCPE (Catalase isozyme 2 OS=Cucurbita pepo GN=CAT2 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 3.482e-62
Identity = 103/145 (71.03%), Postives = 125/145 (86.21%), Query Frame = 1

Query:   46 NSLLSALLLWVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKEN-NFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            N +L+  +  VPGI+YS+DK+LQ R F+YADTQRHRLGPNYLQLPVNAPKC  HNNH++GFMNFMHRDEE++YFPSRYD  RHAE +P PP +  G+RE+C+IPKEN NFKQ G+RYRSWAPDRQERF+ R+V+ALSD +VTHE+
Sbjct:  319 NEMLAFSMSLVPGIHYSDDKMLQARSFAYADTQRHRLGPNYLQLPVNAPKCPHHNNHHEGFMNFMHRDEEVNYFPSRYDACRHAEKYPMPPNVLSGKRERCVIPKENHNFKQAGDRYRSWAPDRQERFVNRFVEALSDSKVTHEV 463

HSP 2 Score: 26.5646 bits (57), Expect = 3.482e-62
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R+IWISYW+QA
Sbjct:  464 RNIWISYWTQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA1_ORYSJ (Catalase isozyme A OS=Oryza sativa subsp. japonica GN=CATA PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.029e-59
Identity = 95/136 (69.85%), Postives = 112/136 (82.35%), Query Frame = 1

Query:   70 LWVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            L VPGIYYS+DK+LQ R+F+YADTQR+RLGPNYL LPVNAPKCA HNNHYDG MNFMHRDEE+DY+PSR+ P+RHA   P  P    GRR+K  I K+N+FKQPGERYRSWAPDRQERFI R+   L+ P+V+ E+
Sbjct:  328 LVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRHAPPTPITPRPVVGRRQKATIHKQNDFKQPGERYRSWAPDRQERFIRRFAGELAHPKVSPEL 463

HSP 2 Score: 41.5874 bits (96), Expect = 2.029e-59
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            LVLN+N+DNFF ENEQLAF P +V
Sbjct:  306 LVLNRNVDNFFNENEQLAFGPGLV 329

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA1_ORYSI (Catalase isozyme A OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.029e-59
Identity = 95/136 (69.85%), Postives = 112/136 (82.35%), Query Frame = 1

Query:   70 LWVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            L VPGIYYS+DK+LQ R+F+YADTQR+RLGPNYL LPVNAPKCA HNNHYDG MNFMHRDEE+DY+PSR+ P+RHA   P  P    GRR+K  I K+N+FKQPGERYRSWAPDRQERFI R+   L+ P+V+ E+
Sbjct:  328 LVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRHAPPTPITPRPVVGRRQKATIHKQNDFKQPGERYRSWAPDRQERFIRRFAGELAHPKVSPEL 463

HSP 2 Score: 41.5874 bits (96), Expect = 2.029e-59
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            LVLN+N+DNFF ENEQLAF P +V
Sbjct:  306 LVLNRNVDNFFNENEQLAFGPGLV 329

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA2_HORVU (Catalase isozyme 2 OS=Hordeum vulgare GN=CAT2 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.085e-57
Identity = 95/138 (68.84%), Postives = 113/138 (81.88%), Query Frame = 1

Query:   70 LWVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAE--MHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            L VPGIYYS+DK+LQ R+F+YADTQR+RLGPNYL LPVNAPKC   NNHYDG MNFMHRDEE+DY+PSR+ P+RHAE    P P     G+REK  I KEN+F QPGERYRSWAPDRQ+RF+ R+ DAL+ P+V+HE+
Sbjct:  328 LVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCGFKNNHYDGAMNFMHRDEEVDYYPSRHAPLRHAEPASFPVPTRPVVGKREKTRIKKENDFVQPGERYRSWAPDRQDRFVRRFSDALAHPKVSHEL 465

HSP 2 Score: 39.6614 bits (91), Expect = 1.085e-57
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            LVL++N+DNFF ENEQLAF P +V
Sbjct:  306 LVLDRNVDNFFNENEQLAFGPGLV 329

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA3_MAIZE (Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 1.539e-56
Identity = 92/137 (67.15%), Postives = 110/137 (80.29%), Query Frame = 1

Query:   70 LWVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRH-AEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            L VPGIYYS+DK+LQ R+F+YADTQR+RLGPNYL LPVNAP+CA HNNHYDG MNFMHRDEE+DY+PSR+ P+R  A   P PP    GRREK  I K N+FKQPGERYRSW  DRQ+RF+ R+ D+L  P+V+ E+
Sbjct:  331 LVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPRCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRQAAPPTPLPPRPVAGRREKATIRKPNDFKQPGERYRSWDADRQDRFVRRFADSLGHPKVSQEL 467

HSP 2 Score: 39.6614 bits (91), Expect = 1.539e-56
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            LVL++N+DNFF ENEQLAF P +V
Sbjct:  309 LVLDRNVDNFFNENEQLAFGPGLV 332

The following BLAST results are available for this feature:

BLAST of CK740274 vs. ExPASy Swiss-Prot

BLAST of CK740274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128


Match Name	E-value	Identity	Description
CATA1_SOLLC	2.578e-65	74.63	Catalase isozyme 1 OS=Solanum lycopersicum GN=CAT1...	[more]
CATA_IPOBA	5.967e-65	74.63	Catalase OS=Ipomoea batatas PE=2 SV=1	[more]
CATA2_SOLTU	1.256e-64	73.88	Catalase isozyme 2 OS=Solanum tuberosum GN=CAT2 PE...	[more]
CATA1_SOLTU	3.609e-64	73.88	Catalase isozyme 1 OS=Solanum tuberosum GN=CAT1 PE...	[more]
CATA3_CUCPE	9.240e-63	71.72	Catalase isozyme 3 OS=Cucurbita pepo GN=CAT3 PE=2 ...	[more]
CATA2_CUCPE	3.482e-62	71.03	Catalase isozyme 2 OS=Cucurbita pepo GN=CAT2 PE=2 ...	[more]
CATA1_ORYSJ	2.029e-59	69.85	Catalase isozyme A OS=Oryza sativa subsp. japonica...	[more]
CATA1_ORYSI	2.029e-59	69.85	Catalase isozyme A OS=Oryza sativa subsp. indica P...	[more]
CATA2_HORVU	1.085e-57	68.84	Catalase isozyme 2 OS=Hordeum vulgare GN=CAT2 PE=2...	[more]
CATA3_MAIZE	1.539e-56	67.15	Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6417 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63B09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740274 ID=CK740274; Name=CK740274; organism=Citrus sinensis; type=EST; length=515bp
GGTTGGTTTTGAACAAGAACATTGATAACTTCTTTGCAGAGAATGAACAG
CTTGCTTTCTGCCCTGCTATTGTGGGTTCCTGGCATCTACTATTCAAATG
ATAAGTTGCTCCAGACTCGAATCTTCTCCTATGCTGATACTCAGAGGCAC
CGTCTAGGGCCGAACTATCTTCAACTCCCAGTAAATGCACCCAAATGTGC
TCAGCACAACAATCATTATGACGGTTTCATGAATTTCATGCACAGGGATG
AGGAGATCGATTACTTCCCTTCAAGGTATGATCCTGTCCGTCATGCTGAG
ATGCATCCAACTCCTCCTGAAATCTGCGGCGGAAGGCGCGAGAAGTGCAT
AATTCCAAAGGAAAACAACTTCAAACAACCTGGAGAGAGATACCGATCTT
GGGCACCAGACAGGCAAGAGCGATTCATCTGCAGATGGGTTGATGCTTTA
TCTGATCCACGCGTCACCCATGAGATCCCGCCACATATGGATCTCATACT
GGTCTCAGGCTTGCA