CK740274 | Citrus Genome Database

Overview


Name	CK740274
Unique Name	CK740274
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	515

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_VIBPA (Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.593e-13
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMH-RDEEIDYFPSR-YDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRS 399
            +PGI  S D+LLQ R+F+YADTQ +RLG N  QLPVN P  + +N++ +G  N     + +++Y PSR  +     +      ++ G  ++K  I K  +F Q G  YRS
Sbjct:  335 IPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNRPLTSVNNHNQNGLSNNAQLSNGDVNYEPSRKLNLAEDNQFKAVETKLVGTVQQKA-ISKPRDFYQAGVLYRS 443

HSP 2 Score: 26.9498 bits (58), Expect = 2.593e-13
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPA 68
            + LN+  +NFF E EQ AF P+
Sbjct:  311 MTLNRLPENFFLETEQSAFAPS 332

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_STAAW (Catalase OS=Staphylococcus aureus (strain MW2) GN=katA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.593e-13
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPS---RYDPVRHAEMHPTPPEICG---GRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDAL 450
            +PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+   ++D     +  P P +  G    +R+      +N F+QPG+ +R  + D +ER      +A+
Sbjct:  321 IPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQ----DDDNYFEQPGKLFRLQSEDAKERIFTNTANAM 453

HSP 2 Score: 27.7202 bits (60), Expect = 2.593e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:    9 LNKNIDNFFAENEQLAFCP 65
            LN+N DN+F + EQ AF P
Sbjct:  299 LNRNPDNYFMDVEQAAFAP 317

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_STAAS (Catalase OS=Staphylococcus aureus (strain MSSA476) GN=katA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.593e-13
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPS---RYDPVRHAEMHPTPPEICG---GRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDAL 450
            +PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+   ++D     +  P P +  G    +R+      +N F+QPG+ +R  + D +ER      +A+
Sbjct:  321 IPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQ----DDDNYFEQPGKLFRLQSEDAKERIFTNTANAM 453

HSP 2 Score: 27.7202 bits (60), Expect = 2.593e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:    9 LNKNIDNFFAENEQLAFCP 65
            LN+N DN+F + EQ AF P
Sbjct:  299 LNRNPDNYFMDVEQAAFAP 317

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_STAAR (Catalase OS=Staphylococcus aureus (strain MRSA252) GN=katA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.593e-13
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPS---RYDPVRHAEMHPTPPEICG---GRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDAL 450
            +PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+   ++D     +  P P +  G    +R+      +N F+QPG+ +R  + D +ER      +A+
Sbjct:  321 IPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQ----DDDNYFEQPGKLFRLQSEDAKERIFTNTANAM 453

HSP 2 Score: 27.7202 bits (60), Expect = 2.593e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:    9 LNKNIDNFFAENEQLAFCP 65
            LN+N DN+F + EQ AF P
Sbjct:  299 LNRNPDNYFMDVEQAAFAP 317

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_STAAN (Catalase OS=Staphylococcus aureus (strain N315) GN=katA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.593e-13
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPS---RYDPVRHAEMHPTPPEICG---GRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDAL 450
            +PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+   ++D     +  P P +  G    +R+      +N F+QPG+ +R  + D +ER      +A+
Sbjct:  321 IPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQ----DDDNYFEQPGKLFRLQSEDAKERIFTNTANAM 453

HSP 2 Score: 27.7202 bits (60), Expect = 2.593e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:    9 LNKNIDNFFAENEQLAFCP 65
            LN+N DN+F + EQ AF P
Sbjct:  299 LNRNPDNYFMDVEQAAFAP 317

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_STAAM (Catalase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=katA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.593e-13
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPS---RYDPVRHAEMHPTPPEICG---GRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDAL 450
            +PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+   ++D     +  P P +  G    +R+      +N F+QPG+ +R  + D +ER      +A+
Sbjct:  321 IPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQ----DDDNYFEQPGKLFRLQSEDAKERIFTNTANAM 453

HSP 2 Score: 27.7202 bits (60), Expect = 2.593e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:    9 LNKNIDNFFAENEQLAFCP 65
            LN+N DN+F + EQ AF P
Sbjct:  299 LNRNPDNYFMDVEQAAFAP 317

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_STAAC (Catalase OS=Staphylococcus aureus (strain COL) GN=katA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.593e-13
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPS---RYDPVRHAEMHPTPPEICG---GRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDAL 450
            +PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+   ++D     +  P P +  G    +R+      +N F+QPG+ +R  + D +ER      +A+
Sbjct:  321 IPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQ----DDDNYFEQPGKLFRLQSEDAKERIFTNTANAM 453

HSP 2 Score: 27.7202 bits (60), Expect = 2.593e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:    9 LNKNIDNFFAENEQLAFCP 65
            LN+N DN+F + EQ AF P
Sbjct:  299 LNRNPDNYFMDVEQAAFAP 317

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_STAAB (Catalase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=katA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.593e-13
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPS---RYDPVRHAEMHPTPPEICG---GRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDAL 450
            +PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+   ++D     +  P P +  G    +R+      +N F+QPG+ +R  + D +ER      +A+
Sbjct:  321 IPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQ----DDDNYFEQPGKLFRLQSEDAKERIFTNTANAM 453

HSP 2 Score: 27.7202 bits (60), Expect = 2.593e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:    9 LNKNIDNFFAENEQLAFCP 65
            LN+N DN+F + EQ AF P
Sbjct:  299 LNRNPDNYFMDVEQAAFAP 317

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_STAA8 (Catalase OS=Staphylococcus aureus (strain NCTC 8325) GN=katA PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.593e-13
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPS---RYDPVRHAEMHPTPPEICG---GRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDAL 450
            +PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+   ++D     +  P P +  G    +R+      +N F+QPG+ +R  + D +ER      +A+
Sbjct:  321 IPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQ----DDDNYFEQPGKLFRLQSEDAKERIFTNTANAM 453

HSP 2 Score: 27.7202 bits (60), Expect = 2.593e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:    9 LNKNIDNFFAENEQLAFCP 65
            LN+N DN+F + EQ AF P
Sbjct:  299 LNRNPDNYFMDVEQAAFAP 317

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_STAA3 (Catalase OS=Staphylococcus aureus (strain USA300) GN=katA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.593e-13
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPS---RYDPVRHAEMHPTPPEICG---GRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDAL 450
            +PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+   ++D     +  P P +  G    +R+      +N F+QPG+ +R  + D +ER      +A+
Sbjct:  321 IPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQ----DDDNYFEQPGKLFRLQSEDAKERIFTNTANAM 453

HSP 2 Score: 27.7202 bits (60), Expect = 2.593e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:    9 LNKNIDNFFAENEQLAFCP 65
            LN+N DN+F + EQ AF P
Sbjct:  299 LNRNPDNYFMDVEQAAFAP 317

The following BLAST results are available for this feature:

BLAST of CK740274 vs. ExPASy Swiss-Prot

BLAST of CK740274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128


Match Name	E-value	Identity	Description
CATA_VIBPA	2.593e-13	38.18	Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=...	[more]
CATA_STAAW	2.593e-13	32.85	Catalase OS=Staphylococcus aureus (strain MW2) GN=...	[more]
CATA_STAAS	2.593e-13	32.85	Catalase OS=Staphylococcus aureus (strain MSSA476)...	[more]
CATA_STAAR	2.593e-13	32.85	Catalase OS=Staphylococcus aureus (strain MRSA252)...	[more]
CATA_STAAN	2.593e-13	32.85	Catalase OS=Staphylococcus aureus (strain N315) GN...	[more]
CATA_STAAM	2.593e-13	32.85	Catalase OS=Staphylococcus aureus (strain Mu50 / A...	[more]
CATA_STAAC	2.593e-13	32.85	Catalase OS=Staphylococcus aureus (strain COL) GN=...	[more]
CATA_STAAB	2.593e-13	32.85	Catalase OS=Staphylococcus aureus (strain bovine R...	[more]
CATA_STAA8	2.593e-13	32.85	Catalase OS=Staphylococcus aureus (strain NCTC 832...	[more]
CATA_STAA3	2.593e-13	32.85	Catalase OS=Staphylococcus aureus (strain USA300) ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6417 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63B09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740274 ID=CK740274; Name=CK740274; organism=Citrus sinensis; type=EST; length=515bp
GGTTGGTTTTGAACAAGAACATTGATAACTTCTTTGCAGAGAATGAACAG
CTTGCTTTCTGCCCTGCTATTGTGGGTTCCTGGCATCTACTATTCAAATG
ATAAGTTGCTCCAGACTCGAATCTTCTCCTATGCTGATACTCAGAGGCAC
CGTCTAGGGCCGAACTATCTTCAACTCCCAGTAAATGCACCCAAATGTGC
TCAGCACAACAATCATTATGACGGTTTCATGAATTTCATGCACAGGGATG
AGGAGATCGATTACTTCCCTTCAAGGTATGATCCTGTCCGTCATGCTGAG
ATGCATCCAACTCCTCCTGAAATCTGCGGCGGAAGGCGCGAGAAGTGCAT
AATTCCAAAGGAAAACAACTTCAAACAACCTGGAGAGAGATACCGATCTT
GGGCACCAGACAGGCAAGAGCGATTCATCTGCAGATGGGTTGATGCTTTA
TCTGATCCACGCGTCACCCATGAGATCCCGCCACATATGGATCTCATACT
GGTCTCAGGCTTGCA