CK740279

Overview
NameCK740279
Unique NameCK740279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9536 contig Csv1_Contig9536:25..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 58/160 (36.25%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LLI ANKQDLP+A++A E+   L L  L  R
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  127 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 618
            L +F+     ++ +F K E  + ++G+  +GKTT +  + S   N +      ++PTVG N+ +I   N  +  WD+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L   L    LQG P+L+L NK+DLP A+   EL   ++L  + +R +C +
Sbjct:    2 LALFNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNED------MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCY 160          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 59/139 (42.45%), Postives = 83/139 (59.71%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 597
            E  +L+LG+D AGKTT+L++         G P D I PT+G NI  +E +   L  WD+GGQ  LRS W  Y+E    +V+V+D+A   R E     L+  L+ E L GA LL+L NKQDLP A+S++E+   L L+ +
Sbjct:   16 EMRILLLGLDNAGKTTILKRFN-------GEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDI 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  145 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            F  L+  +F   E  +L++G+D AGKTT+L KLK   V + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y+     ++FV+D+   SR  +++  L++ L  ++++ A LL+ ANKQDLP+A+SA E+   L L  + +R    +A
Sbjct:    5 FSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 56/147 (38.10%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++T L + + + +++ A +LI ANKQDLPDA+   E+   L L ++ +R
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  139 SLFYGLWK---YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 609
            SLF G  K    +F+  E  +L+LG+D AGKTT+L KLK   S V        +PTVG N+  +   N K   WD+GGQ  +R +W  Y+     ++FV+D+A  +R  +++  L + + + +++   LL+LANKQDLP A+S  ++   L L KL +R+
Sbjct:    4 SLFKGFSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVT-------IPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRL 156          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 55/153 (35.95%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            L+  +F K +  +L++G+D AGKTT+L K+K   V + +         PT+G N+  +E  N     WD+GGQ  +R +W  YY     ++FV+D+    R +D++  L + +  E+L+ A +L+ ANKQDLP+A+SA E+   L L  + ER
Sbjct:    8 LFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTI---------PTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRER 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.352e-24
Identity = 59/160 (36.88%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            +FSLF G       K E  +L++G+D AGK+TLL KLK   V S +         PT+G N+  IE  N  +  WD+GGQ  +R +W+ YY  ++AV+FV+D+    R ++ K  ++  L  ++L+G  +L+ ANKQD+ +A++  E+   LDL  + +R
Sbjct:   16 IFSLFEG-------KKETRILMIGLDGAGKSTLLYKLKLGDVVSTI---------PTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDR 159          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.352e-24
Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+  NKQDLP+A++A E+   L L  L +R
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.352e-24
Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+  NKQDLP+A++A E+   L L  L +R
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQR 151          
The following BLAST results are available for this feature:
BLAST of CK740279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARF1_DROME3.137e-2436.25ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARL8A_CHICK4.098e-2434.55ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]
ARL2_DROME4.098e-2442.45ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARF_ASHGO4.098e-2434.57ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF3_DROME4.098e-2438.10ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF2_SCHPO4.098e-2437.50Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF1_PLAFO4.098e-2435.95ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARFJ_DICDI5.352e-2436.88ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF2_RAT5.352e-2435.00ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE5.352e-2435.00ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6422 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740279 ID=CK740279; Name=CK740279; organism=Citrus sinensis; type=EST; length=626bp
GATTGCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGA
CTTTGGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAA
TAAATACAAATTAACCGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTAT
GGACTTTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCT
TGGAATTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTG
TCTACTCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTG
GGACTGAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTG
GGATCTGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATG
AAGAGGCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGT
TTTGAAGATTCAAAAACTGCTCTAGAAAAGGGTCTTCGGAATGAGGATTT
GCAAGGAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATG
CTGTATCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGAT
GAACGGGTTTGCATGTTTGAAGCAGT
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