CK740279

Overview
NameCK740279
Unique NameCK740279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9536 contig Csv1_Contig9536:25..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 1
Query:  190 VLILGIDKAGKTTLLEKLKSVYSN------VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDL-PDAVSADELAR-YLDLKKLDERVCM 615
            V+ILG++  GKTTLL  +   YS       +  LP    +PT G N+  I +   K   WD+GG+   R  +  Y   E  +++FV D++  +  E+SK   +       L+  P L++ANKQDL    +  DE+ + Y D   ++E + M
Sbjct:   20 VMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIP--IPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILM 168          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: AR13A_HUMAN (ADP-ribosylation factor-like protein 13A OS=Homo sapiens GN=ARL13A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  172 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 597
            T+    + I+G++ +GKT L+E  +        L P +    +   +  + +   +L  +DL G    R  W  YY +AH +VFV+D++   R ++ K  L   L ++ + G P+LILANKQD   A+   ++  YL LKKL
Sbjct:   18 TRRNVTIPIIGLNNSGKTVLVEAFQK-------LLPSKTDHCMKSELTTLLLDEYELSIYDLNGDLKGREAWPNYYAQAHGLVFVLDSSDIRRMQEVKIILTHLLSDKRVAGKPILILANKQDKKKALMPCDIIDYLLLKKL 152          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF_ENCCU (ADP-ribosylation factor OS=Encephalitozoon cuniculi GN=ARF-1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  139 SLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDL 543
            +L Y   + +F+ ++E  + ++G+D AGKTTLL  L++   +       + VPT+G N   + + + K   WD+GGQ      W +Y  E   +++++D A P RF  S   L + + N      PLL+LANK DL
Sbjct:   10 NLLYTKLRGLFSGQSERSITMIGLDGAGKTTLLLYLQTGEVH-------QTVPTLGFNCENVTLGSMKFQVWDIGGQNSFMRFWHQYINEGCGIIYMVDCADPQRFGKSGEELWR-ILNILNSPRPLLVLANKIDL 137          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 49/154 (31.82%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  145 FYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV-VFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD 600
            FY ++ ++ F K E  ++I+G+  AGKTTLL  L      V G     I PT+  N       N     +DLGGQ  LR +W++Y  ++  + VF++D++  +   +SK+ +   L +E L  +PLLIL +K D     + + L   LD+++ +
Sbjct:    7 FYNMFLWLGFFKKEAKIVIIGLGNAGKTTLLHLL------VTGSLKSHI-PTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIRRFE 153          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 46/143 (32.17%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  190 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 618
            +L+LG+D AGKT++L  L S  + V+      + PT G +   I   +S++ F ++GG    RS WE Y  +   ++FV+D+A  SR  ++K  L + +    +   PL++ ANKQDL  A    ++   L L ++     MF
Sbjct:   21 ILVLGLDGAGKTSVLHSLAS--NRVQ----HSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALALSEVGNDRKMF 155          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: AR13A_MOUSE (ADP-ribosylation factor-like protein 13A OS=Mus musculus GN=Arl13a PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 44/159 (27.67%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFH----VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 597
            MF L    W    T  E      ++++G+D +GK+ L+E  +        L P ++   +      + + + ++  +DL G    R  W  YY +AH ++FV+D++  +R ++ K  L + + ++ + G P+LILANKQD  +A+   ++  YL L++L
Sbjct:    1 MFRLLTACWSRQKTTEEKQRNVTIIVIGLDNSGKSRLIEAFQR-------LIPSKMHKEMRPTQTTLLLDDYQVSIYDLTGDVKGREKWSSYYAQAHGLIFVVDSSDIARIQEVKIILTRIMFDKRVSGKPILILANKQDKKNALLPCDIIEYLLLERL 152          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 48/135 (35.56%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  190 VLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGL-RNEDLQGAPLLILANKQDLPDAVSADELARYLDL 588
            VL+LG+D +GK+T L  L        G PP +  VPT G N  R+   N ++   ++G    LR  W+++  E   +VF++D+    R   ++  L+K L R+ DL   P++I+ANKQDL  A++  EL + L L
Sbjct:   79 VLVLGLDGSGKSTFLRMLA-------GKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDPDL---PVVIVANKQDLSGAMNMVELQQELGL 203          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: AR13A_RAT (ADP-ribosylation factor-like protein 13A OS=Rattus norvegicus GN=Arl13a PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 40/136 (29.41%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  190 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 597
            ++++G+D +GK+ L+   +        L P ++   +      + + + ++  +DL G    R  W  YY EAH +VFV+D++  +R ++ K  L + + ++ + G P+LILANKQD  DA+   ++  YL L++L
Sbjct:   24 IIVIGLDNSGKSHLVAAFQR-------LIPSKMHSEMRPTQTTLLLDDYQVSVYDLTGDLKGREKWPNYYAEAHGLVFVVDSSDIARIQEVKIILTRLMFDKRVSGKPILILANKQDKKDALLPCDIIEYLLLERL 152          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL16_HUMAN (ADP-ribosylation factor-like protein 16 OS=Homo sapiens GN=ARL16 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 51/137 (37.23%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  193 LILGIDKAGKTTLLEKLKSVYS-----NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL 588
            L+LG    GKT L+++L+ V S     ++   PP R  PTVG N+  I V+  K+   +LGG  G   IW  YY    +++FV+DA+ P++   S   L   L  E L  A +LIL NK DLP  +S +E+   + L
Sbjct:   27 LLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPPTR--PTVGTNLTDI-VAQRKITIRELGGCMG--PIWSSYYGNCRSLLFVMDASDPTQLSASCVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRL 158          
The following BLAST results are available for this feature:
BLAST of CK740279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARLX_DICDI3.254e-1331.79ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
AR13A_HUMAN7.250e-1331.69ADP-ribosylation factor-like protein 13A OS=Homo s... [more]
ARF_ENCCU1.237e-1233.09ADP-ribosylation factor OS=Encephalitozoon cunicul... [more]
SAR1B_DICDI1.615e-1231.82GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
ARL9_HUMAN2.109e-1232.17ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
AR13A_MOUSE2.109e-1227.67ADP-ribosylation factor-like protein 13A OS=Mus mu... [more]
ARL10_MOUSE1.047e-1135.56ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
AR13A_RAT1.047e-1129.41ADP-ribosylation factor-like protein 13A OS=Rattus... [more]
ARL16_HUMAN2.332e-1137.23ADP-ribosylation factor-like protein 16 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6422 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740279 ID=CK740279; Name=CK740279; organism=Citrus sinensis; type=EST; length=626bp
GATTGCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGA
CTTTGGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAA
TAAATACAAATTAACCGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTAT
GGACTTTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCT
TGGAATTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTG
TCTACTCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTG
GGACTGAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTG
GGATCTGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATG
AAGAGGCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGT
TTTGAAGATTCAAAAACTGCTCTAGAAAAGGGTCTTCGGAATGAGGATTT
GCAAGGAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATG
CTGTATCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGAT
GAACGGGTTTGCATGTTTGAAGCAGT
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