CK740279

Overview
NameCK740279
Unique NameCK740279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9536 contig Csv1_Contig9536:25..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 55/156 (35.26%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  145 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            F  L+  I+ K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N +   WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L++ L  ++L+ A LL+ ANKQDLP+A+S  E+ + L L+ L  R
Sbjct:    5 FSKLFDRIWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTRR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 56/153 (36.60%), Postives = 88/153 (57.52%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            L+  +F   E  +L++G+D AGKTT+L KLK   V + +         PT+G N+  ++  N     WD+GGQ  +RS+W  YY     V+FVID+   SR  +++  +++ L  ++L+ A  L+ ANKQDLP+A+SA E+   L L  +  R
Sbjct:    8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP A++A E+   L L  L  R    +A
Sbjct:    1 MGNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP A++A E+   L L  L  R    +A
Sbjct:    1 MGNVFGSLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L + L  E L G P+LI ANKQDL  A  A E+A  L+L  + +RV   ++
Sbjct:   17 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 59/139 (42.45%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 597
            E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+GGQ  LRS W  Y+E    +++V+D+A   R +D +  L+  L  E L GA LLI ANKQDLP A+S + +   L+L  +
Sbjct:   16 ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 597
            E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+GGQ  LRS W  Y+E    +++V+D+A   R +D +  L+  L  E L GA LLI ANKQDLP A+S++ +   L+L  +
Sbjct:   16 ELRLLMLGLDNAGKTTILKKFN-------GEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALSSNAIREALELDSI 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 55/156 (35.26%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  145 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R
Sbjct:    5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 55/156 (35.26%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  145 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R
Sbjct:    5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 55/156 (35.26%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  145 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R
Sbjct:    5 FAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
The following BLAST results are available for this feature:
BLAST of CK740279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARF_AJECA9.128e-2435.26ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF2_YEAST9.128e-2436.60ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF12_CAEEL9.128e-2434.94ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR9.128e-2434.94ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARL3_XENLA1.192e-2341.22ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]
ARL2_MOUSE1.192e-2342.45ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL2_BOVIN1.192e-2342.45ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARF_VIGUN1.192e-2335.26ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF2_ORYSJ1.192e-2335.26ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF2_ARATH1.192e-2335.26ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6422 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740279 ID=CK740279; Name=CK740279; organism=Citrus sinensis; type=EST; length=626bp
GATTGCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGA
CTTTGGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAA
TAAATACAAATTAACCGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTAT
GGACTTTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCT
TGGAATTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTG
TCTACTCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTG
GGACTGAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTG
GGATCTGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATG
AAGAGGCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGT
TTTGAAGATTCAAAAACTGCTCTAGAAAAGGGTCTTCGGAATGAGGATTT
GCAAGGAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATG
CTGTATCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGAT
GAACGGGTTTGCATGTTTGAAGCAGT
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