CK740279

Overview
NameCK740279
Unique NameCK740279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 54/155 (34.84%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L++ L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    +A
Sbjct:   12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L + + + +++ A +LI ANKQDLPDA+   E+   L L ++ +R
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L + + + +++ A +LI ANKQDLPDA+   E+   L L ++ +R
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L + + + +++ A +LI ANKQDLPDA+   E+   L L ++ +R
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L + + + +++ A +LI ANKQDLPDA+   E+   L L ++ +R
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L + + + +++ A +LI ANKQDLPDA+   E+   L L ++ +R
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 55/159 (34.59%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++    L+K L  ++LQ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 55/159 (34.59%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++    L+K L  ++LQ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 55/159 (34.59%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            L++ +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  ++   L++ L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R    +A
Sbjct:    8 LFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 55/165 (33.33%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  127 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 618
            L + S     ++ +F K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ ++   N  +  WD+GGQP  RS+WE+Y    +A+V++IDAA   + E S+  L   L    LQG P+L+L NK+DLP+A+   +L   ++L  + +R +C +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCY 160          
The following BLAST results are available for this feature:
BLAST of CK740279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARF_CRYNE2.034e-2334.84ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF6_RAT2.034e-2337.41ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG2.034e-2337.41ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE2.034e-2337.41ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN2.034e-2337.41ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK2.034e-2337.41ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF4_RAT2.034e-2334.59ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE2.034e-2334.59ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF1_SCHPO2.034e-2334.59ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARL8B_RAT2.656e-2333.33ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6422 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740279 ID=CK740279; Name=CK740279; organism=Citrus sinensis; type=EST; length=626bp
GATTGCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGA
CTTTGGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAA
TAAATACAAATTAACCGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTAT
GGACTTTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCT
TGGAATTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTG
TCTACTCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTG
GGACTGAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTG
GGATCTGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATG
AAGAGGCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGT
TTTGAAGATTCAAAAACTGCTCTAGAAAAGGGTCTTCGGAATGAGGATTT
GCAAGGAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATG
CTGTATCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGAT
GAACGGGTTTGCATGTTTGAAGCAGT
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