CK740279

Overview
NameCK740279
Unique NameCK740279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 55/165 (33.33%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  127 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 618
            L + S     ++ +F K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ ++   N  +  WD+GGQP  RS+WE+Y    +A+V++IDAA   + E S+  L   L    LQG P+L+L NK+DLP+A+   +L   ++L  + +R +C +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCY 160          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 55/165 (33.33%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  127 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 618
            L + S     ++ +F K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ ++   N  +  WD+GGQP  RS+WE+Y    +A+V++IDAA   + E S+  L   L    LQG P+L+L NK+DLP+A+   +L   ++L  + +R +C +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCY 160          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 56/165 (33.94%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  127 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 618
            + +F+     +K +F K E  + ++G+  +GKTT +  + S   N +      ++PTVG N+ +I   N  +  WD+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L   L    LQG P+L+L NK+DL  A+   EL   ++L  + +R +C +
Sbjct:    2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNED------MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCY 160          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 56/160 (35.00%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 56/160 (35.00%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 56/160 (35.00%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 56/160 (35.00%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 56/160 (35.00%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 56/160 (35.00%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            M ++F  L K +  K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 54/153 (35.29%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R
Sbjct:    8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
The following BLAST results are available for this feature:
BLAST of CK740279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARL8B_MOUSE2.656e-2333.33ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]
ARL8B_HUMAN2.656e-2333.33ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
ARL8A_MOUSE2.656e-2333.94ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
ARF3_TAKRU2.656e-2335.00ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT2.656e-2335.00ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB2.656e-2335.00ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE2.656e-2335.00ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN2.656e-2335.00ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN2.656e-2335.00ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF1_SOLTU2.656e-2335.29ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6422 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740279 ID=CK740279; Name=CK740279; organism=Citrus sinensis; type=EST; length=626bp
GATTGCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGA
CTTTGGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAA
TAAATACAAATTAACCGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTAT
GGACTTTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCT
TGGAATTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTG
TCTACTCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTG
GGACTGAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTG
GGATCTGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATG
AAGAGGCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGT
TTTGAAGATTCAAAAACTGCTCTAGAAAAGGGTCTTCGGAATGAGGATTT
GCAAGGAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATG
CTGTATCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGAT
GAACGGGTTTGCATGTTTGAAGCAGT
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