CK740279

Overview
NameCK740279
Unique NameCK740279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9536 contig Csv1_Contig9536:25..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 55/165 (33.33%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  127 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 618
            L + S     ++ +F K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ ++   N  +  WD+GGQP  RS+WE+Y    +A+V++IDAA   + E S+  L   L    LQG P+L+L NK+DLP+A+   +L   ++L  + +R +C +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCY 160          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  139 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDE 603
            S+F  +W   F   E+ V+I+G++ AGKTT L KL            D +V   PTVG N+      N +L+ WDLGGQ  LRS W +YY    AV+ VID+   +R    K  L K L +E+L+ + +LI ANKQDL DA+S  EL+  L L  + +
Sbjct:    6 SIFASIWNRFFNNAEYKVIIVGLNAAGKTTTLYKLLL----------DEVVSTTPTVGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKD 153          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 58/139 (41.73%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 597
            +  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+GGQ  LRS W  Y+E    +++V+D+A   R +D +  L+  L  E L GA LLI ANKQDLP A+S + +   L+L  +
Sbjct:   16 DVRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 58/160 (36.25%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            +FSLF G       K +  +L++G+D AGK+TLL KLK   + S V         PT+G N+  IE  N  +  WD+GGQ  +R++W+ YY   +A++FV+D+    R ++ K  ++  L  E+L+G  +LI ANKQD+ +A++  E+   L+L  + +R
Sbjct:   16 IFSLFEG-------KKQTRILMIGLDGAGKSTLLYKLKLGDIVSTV---------PTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDR 159          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 55/159 (34.59%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            ++  IF K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++S   L+K L+ ++L+ A LL+ ANKQD+P+A+   EL   L L+ L  R    +A
Sbjct:    8 IFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 54/159 (33.96%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R +++   L+K L+ ++L+ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 55/143 (38.46%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK 594
            +F   E  +L+LG+DKAGKTT+L KLK               PTVG N+  +   N K   WD+GGQ  LR +W  Y+    A++FVID++  +R E++K  L   +  ++++   LL+ ANKQDL DA+   E++ +L+L+K
Sbjct:   12 LFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTS-------TPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEK 147          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 53/149 (35.57%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            +F+K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R
Sbjct:   12 LFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 54/159 (33.96%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++    L+K L+ ++L+ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 59/148 (39.86%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            E  +L+LG+D  GKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L + L  E L G P+L+ ANKQDL  A  A E+A  L+L  + +RV   ++
Sbjct:   17 EVRILLLGLDNGGKTTLLKQLAS-----EDIT--HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 157          
The following BLAST results are available for this feature:
BLAST of CK740279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARL8B_MACFA3.469e-2333.33ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]
ARL5_DICDI3.469e-2340.51ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]
ARL2_RAT3.469e-2341.73ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARFH_DICDI3.469e-2336.25ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARF5_CHICK3.469e-2334.59ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF4_XENLA3.469e-2333.96ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF3_YEAST3.469e-2338.46ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARF1_SALBA3.469e-2335.57ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF4_BOVIN4.530e-2333.96ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARL3_DANRE5.917e-2339.86ADP-ribosylation factor-like protein 3 OS=Danio re... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6422 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740279 ID=CK740279; Name=CK740279; organism=Citrus sinensis; type=EST; length=626bp
GATTGCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGA
CTTTGGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAA
TAAATACAAATTAACCGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTAT
GGACTTTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCT
TGGAATTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTG
TCTACTCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTG
GGACTGAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTG
GGATCTGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATG
AAGAGGCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGT
TTTGAAGATTCAAAAACTGCTCTAGAAAAGGGTCTTCGGAATGAGGATTT
GCAAGGAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATG
CTGTATCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGAT
GAACGGGTTTGCATGTTTGAAGCAGT
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