CK740279

Overview
NameCK740279
Unique NameCK740279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9536 contig Csv1_Contig9536:25..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 53/155 (34.19%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  157 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 618
            +K +F K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ ++   N  +  WD+GGQP  RS+WE+Y    +A+V+++DAA   + E S+  L   L    LQG P+L+L NK+DLP+A+   +L   ++L  + +R +C +
Sbjct:   12 FKSLFWKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCY 160          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL8B_BOVIN (ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 54/165 (32.73%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  127 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 618
            L + S     ++ +F K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ ++   N  +  WD+GGQP  +S+WE+Y    +A+V++IDAA   + E S+  L   L    LQG P+L+L NK+DLP+A+   +L   ++L  + +R +C +
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCY 160          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W+ Y+E    +++VID+A   RFE++   L + L  E L   P+LI ANKQDL  A  A E+A  L+L  + +RV   ++
Sbjct:   17 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 53/149 (35.57%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L + L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R
Sbjct:   12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  142 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            LF  ++  +F   E  +L+LG+D AGKTT+L +L+   V S +         PT+G N+  ++ +N K   WDLGGQ  +R  W  Y+    AV++V+D++   R   +K      L  E+L+GA +LI ANKQDLP A+    +   L+L K+  R
Sbjct:    4 LFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTI---------PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSR 151          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L + L  E L   P+LI ANKQDL  A  A E+A  L+L  + +RV   ++
Sbjct:   17 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L + L  E L   P+LI ANKQDL  A  A E+A  L+L  + +RV   ++
Sbjct:   17 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 52/159 (32.70%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  154 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            L+  +  + E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L+  L  ++L+ A LL+LANKQDLP+A++A E+   + L  +  R    +A
Sbjct:    8 LFASLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQA 157          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 54/141 (38.30%), Postives = 87/141 (61.70%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDE 603
            E  +L++G+D +GKTT++ K+    ++V       I PT+G NI  I      L  WD+GGQ  +RS W  Y+E+   +V+V+D++   R +D K  L+  L+ E L G+ LLILANKQD+  A++ DE+ + L+L+ +D+
Sbjct:   16 EMRILMVGLDNSGKTTIVLKINGEDTSV-------ISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKVLNLESMDK 149          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  142 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            LF  ++  +F   E  +L+LG+D AGKTT+L +L+   V S +         PT+G N+  ++ +N K   WDLGGQ  +R  W  Y+    AV++V+D++   R   +K      L  ++L+GA +LI ANKQDLP A+    +   L+L K+  R
Sbjct:    4 LFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTI---------PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSR 151          
The following BLAST results are available for this feature:
BLAST of CK740279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
AR8BA_DANRE5.917e-2334.19ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]
ARL8B_BOVIN7.728e-2332.73ADP-ribosylation factor-like protein 8B OS=Bos tau... [more]
ARL3_HUMAN7.728e-2340.54ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
ARF1_CHLRE7.728e-2335.57ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_BRARP7.728e-2336.31ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARL3_PIG1.009e-2240.54ADP-ribosylation factor-like protein 3 OS=Sus scro... [more]
ARL3_MOUSE1.009e-2240.54ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARF_CANAL1.318e-2232.70ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF5_ARATH1.318e-2238.30Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARF3_ARATH1.722e-2235.67ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6422 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740279 ID=CK740279; Name=CK740279; organism=Citrus sinensis; type=EST; length=626bp
GATTGCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGA
CTTTGGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAA
TAAATACAAATTAACCGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTAT
GGACTTTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCT
TGGAATTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTG
TCTACTCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTG
GGACTGAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTG
GGATCTGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATG
AAGAGGCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGT
TTTGAAGATTCAAAAACTGCTCTAGAAAAGGGTCTTCGGAATGAGGATTT
GCAAGGAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATG
CTGTATCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGAT
GAACGGGTTTGCATGTTTGAAGCAGT
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