CK740280

Overview
NameCK740280
Unique NameCK740280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 1.711e-53
Identity = 107/133 (80.45%), Postives = 118/133 (88.72%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTG KAPRKQ   K  +++     GG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRFQS AVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+QLARRIR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSA-PATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 1.711e-53
Identity = 107/133 (80.45%), Postives = 118/133 (88.72%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTG KAPRKQ   K  +++     GG+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRFQS AVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+QLARRIR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSA-PATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_AJECA (Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 4.980e-53
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  ++      GGVKKPHRY+PG VALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+R
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARK-AAPSTGGVKKPHRYKPGAVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.504e-53
Identity = 111/138 (80.43%), Postives = 118/138 (85.51%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQP-----GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTG K PRK   H G ++   Q P     GGVKK HR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQ+FKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDI LARRIR
Sbjct:    1 MARTKQTARKSTGAKVPRK---HIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHLARRIR 135
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_ZYGBA (Histone H3 OS=Zygosaccharomyces bailii GN=HHT1 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 2.471e-52
Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHAKRVTI  KDI+LARR+R
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSA-PSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_YEAST (Histone H3 OS=Saccharomyces cerevisiae GN=HHT1 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 2.471e-52
Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHAKRVTI  KDI+LARR+R
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSA-PSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_KLULA (Histone H3 OS=Kluyveromyces lactis GN=HHT1 PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 2.471e-52
Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHAKRVTI  KDI+LARR+R
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSA-PSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_CANGA (Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 2.471e-52
Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHAKRVTI  KDI+LARR+R
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSA-PSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_ASHGO (Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 2.471e-52
Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHAKRVTI  KDI+LARR+R
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSA-PSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3L_CAIMO (Histone H3-like OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 4.215e-52
Identity = 108/133 (81.20%), Postives = 114/133 (85.71%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTA KSTG KAPRKQ   K   ++     GGVKKPH YRPGTVAL EI +YQKSTELLI KLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRV+IMPKDIQL RRIR
Sbjct:    1 MARTKQTACKSTGRKAPRKQLATKAAHKSAPAM-GGVKKPHCYRPGTVALHEIHRYQKSTELLICKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVSIMPKDIQLTRRIR 132
The following BLAST results are available for this feature:
BLAST of CK740280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H31_TETTH1.711e-5380.45Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY1.711e-5380.45Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3_AJECA4.980e-5380.45Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 S... [more]
H33A_DICDI6.504e-5380.43Histone H3.3 type a OS=Dictyostelium discoideum GN... [more]
H3_ZYGBA2.471e-5279.70Histone H3 OS=Zygosaccharomyces bailii GN=HHT1 PE=... [more]
H3_YEAST2.471e-5279.70Histone H3 OS=Saccharomyces cerevisiae GN=HHT1 PE=... [more]
H3_KLULA2.471e-5279.70Histone H3 OS=Kluyveromyces lactis GN=HHT1 PE=3 SV... [more]
H3_CANGA2.471e-5279.70Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2[more]
H3_ASHGO2.471e-5279.70Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3[more]
H3L_CAIMO4.215e-5281.20Histone H3-like OS=Cairina moschata PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740280 ID=CK740280; Name=CK740280; organism=Citrus sinensis; type=EST; length=432bp
ATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTACGAAGCAA
ACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCCTCGCCA
CAAAGGCGTGCAAGAAAATCTGCTCCAACAACCTGGTGGAGTCAAGAAGC
CCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATAT
CAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGT
TCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACG
CGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTC
GAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCC
CAAGGATATTCAACTGGCAAGGCGAATCCGAG
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