CK740280

Overview
NameCK740280
Unique NameCK740280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig539 contig Csv1_Contig539:59..487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: CENPA_MOUSE (Histone H3-like centromeric protein A OS=Mus musculus GN=Cenpa PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.026e-21
Identity = 61/133 (45.86%), Postives = 77/133 (57.89%), Query Frame = 3
Query:   39 RTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            R  QT R+     AP    +   V    L          R R   + L+EI+  QKST+LL RK PF  +VREI + F    D  +Q+ A+LALQEAAEA+L+ LFED  L ++HA RVT+ PKDIQL RRIR
Sbjct:    5 RKPQTPRRRPSSPAPGPSRQSSSVGSQTL----------RRRQKFMWLKEIKTLQKSTDLLFRKKPFSMVVREICEKFSRGVDFWWQAQALLALQEAAEAFLIHLFEDAYLLSLHAGRVTLFPKDIQLTRRIR 127          
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3L2_LILLO (Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 46/101 (45.54%), Postives = 55/101 (54.46%), Query Frame = 3
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY 335
            MAR K TAR STGGKAPRKQ   K +++       GVK+P     G                  RKLPFQ LVR+I QD KT LRF++H+V  L+E  E Y
Sbjct:    1 MARMKHTARMSTGGKAPRKQLASKALRKAPPPPTKGVKQPTTTTSGKWRFARFH----------RKLPFQGLVRKIWQDLKTHLRFKNHSVPPLEEVTEVY 91          
The following BLAST results are available for this feature:
BLAST of CK740280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CENPA_MOUSE5.026e-2145.86Histone H3-like centromeric protein A OS=Mus muscu... [more]
H3L2_LILLO1.731e-1345.54Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740280 ID=CK740280; Name=CK740280; organism=Citrus sinensis; type=EST; length=432bp
ATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTACGAAGCAA
ACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCCTCGCCA
CAAAGGCGTGCAAGAAAATCTGCTCCAACAACCTGGTGGAGTCAAGAAGC
CCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATAT
CAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGT
TCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACG
CGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTC
GAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCC
CAAGGATATTCAACTGGCAAGGCGAATCCGAG
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