CK740280

Overview
NameCK740280
Unique NameCK740280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H32_MAIZE (Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H32_BRANA (Histone H3.2 OS=Brassica napus PE=2 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 116/133 (87.22%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 116/133 (87.22%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 116/133 (87.22%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 116/133 (87.22%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 5.141e-58
Identity = 116/133 (87.22%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
The following BLAST results are available for this feature:
BLAST of CK740280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H32_MAIZE5.141e-5887.97Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2[more]
H32_EUPES5.141e-5887.97Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3[more]
H32_BRANA5.141e-5887.97Histone H3.2 OS=Brassica napus PE=2 SV=3[more]
H32_ASPOF5.141e-5887.97Histone H3.2 OS=Asparagus officinalis PE=2 SV=3[more]
H32_ARATH5.141e-5887.97Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 ... [more]
H31_RAT5.141e-5887.22Histone H3.1 OS=Rattus norvegicus PE=1 SV=3[more]
H31_MUSPA5.141e-5887.22Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3[more]
H31_MOUSE5.141e-5887.22Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2[more]
H31_HUMAN5.141e-5887.22Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN5.141e-5887.22Histone H3.1 OS=Bos taurus PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740280 ID=CK740280; Name=CK740280; organism=Citrus sinensis; type=EST; length=432bp
ATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTACGAAGCAA
ACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCCTCGCCA
CAAAGGCGTGCAAGAAAATCTGCTCCAACAACCTGGTGGAGTCAAGAAGC
CCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATAT
CAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGT
TCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACG
CGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTC
GAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCC
CAAGGATATTCAACTGGCAAGGCGAATCCGAG
back to top