CK740280

Overview
NameCK740280
Unique NameCK740280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig539 contig Csv1_Contig539:59..487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 6.715e-58
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 6.715e-58
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 6.715e-58
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 6.715e-58
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_STRDR (Histone H3, embryonic OS=Strongylocentrotus droebachiensis PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.145e-57
Identity = 115/133 (86.47%), Postives = 122/133 (91.73%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_SOLST (Histone H3, embryonic OS=Solaster stimpsoni PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.145e-57
Identity = 115/133 (86.47%), Postives = 122/133 (91.73%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_PYCHE (Histone H3, embryonic OS=Pycnopodia helianthoides PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.145e-57
Identity = 115/133 (86.47%), Postives = 122/133 (91.73%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_PSAMI (Histone H3, embryonic OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.145e-57
Identity = 115/133 (86.47%), Postives = 122/133 (91.73%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_PISOC (Histone H3, embryonic OS=Pisaster ochraceus PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.145e-57
Identity = 115/133 (86.47%), Postives = 122/133 (91.73%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
[Close]
BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H3_PISBR (Histone H3, embryonic OS=Pisaster brevispinus PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.145e-57
Identity = 115/133 (86.47%), Postives = 122/133 (91.73%), Query Frame = 3 
Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
The following BLAST results are available for this feature:
BLAST of CK740280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H32_WHEAT6.715e-5887.97Histone H3.2 OS=Triticum aestivum PE=1 SV=2[more]
H32_PEA6.715e-5887.97Histone H3.2 OS=Pisum sativum PE=1 SV=2[more]
H32_ONOVI6.715e-5887.97Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2[more]
H32_MEDSA6.715e-5887.97Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=... [more]
H3_STRDR1.145e-5786.47Histone H3, embryonic OS=Strongylocentrotus droeba... [more]
H3_SOLST1.145e-5786.47Histone H3, embryonic OS=Solaster stimpsoni PE=2 S... [more]
H3_PYCHE1.145e-5786.47Histone H3, embryonic OS=Pycnopodia helianthoides ... [more]
H3_PSAMI1.145e-5786.47Histone H3, embryonic OS=Psammechinus miliaris PE=... [more]
H3_PISOC1.145e-5786.47Histone H3, embryonic OS=Pisaster ochraceus PE=2 S... [more]
H3_PISBR1.145e-5786.47Histone H3, embryonic OS=Pisaster brevispinus PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740280 ID=CK740280; Name=CK740280; organism=Citrus sinensis; type=EST; length=432bp
ATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTACGAAGCAA
ACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCCTCGCCA
CAAAGGCGTGCAAGAAAATCTGCTCCAACAACCTGGTGGAGTCAAGAAGC
CCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATAT
CAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGT
TCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACG
CGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTC
GAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCC
CAAGGATATTCAACTGGCAAGGCGAATCCGAG
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