CK740283

Overview
NameCK740283
Unique NameCK740283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8590 contig Csv1_Contig8590:102..460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 6.001e-13
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 3
Query:  168 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 281
            TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:  135 TGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          

HSP 2 Score: 35.039 bits (79), Expect = 6.001e-13
Identity = 16/30 (53.33%), Postives = 21/30 (70.00%), Query Frame = 1
Query:    7 TVSSNSVVVFSKTFCPFCVSVKELFQQLGV 96
            TV+ N VVV+SKT+C +   VK LF+ L V
Sbjct:   81 TVAENPVVVYSKTWCSYSSQVKSLFKSLQV 110          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 2.896e-12
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  168 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 272
            TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:  116 TGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150          

HSP 2 Score: 43.5134 bits (101), Expect = 2.896e-12
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            QET+S N VV+FSKT C +C   K+LF  + V ++
Sbjct:   61 QETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYK 95          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 2.902e-12
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  168 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 272
            TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:  110 TGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 144          

HSP 2 Score: 43.5134 bits (101), Expect = 2.902e-12
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            QET+S+N VV+FSKT C +C   K LF  + V ++
Sbjct:   55 QETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYK 89          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 3.770e-12
Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 3
Query:  168 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 272
            TG++TVP +F+ G+ IGG   T  LH+EGKL+PL+
Sbjct:  109 TGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143          

HSP 2 Score: 42.3578 bits (98), Expect = 3.770e-12
Identity = 16/35 (45.71%), Postives = 25/35 (71.43%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            QET+S+N VV+FSKT C +C   K++F  + V ++
Sbjct:   54 QETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYK 88          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 44.669 bits (104), Expect = 1.590e-11
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 3
Query:  162 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 284
            E  G++TVP VFI GKH+GG D T   +  G+L  LL  +G
Sbjct:   89 EIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSG 129          

HSP 2 Score: 40.4318 bits (93), Expect = 1.590e-11
Identity = 13/30 (43.33%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQL 90
            ++T+SS+ +V+FSK++CP+C   K +F++L
Sbjct:   36 KKTISSHKIVIFSKSYCPYCKKAKSVFREL 65          

HSP 3 Score: 22.7126 bits (47), Expect = 1.590e-11
Identity = 11/30 (36.67%), Postives = 17/30 (56.67%), Query Frame = 2
Query:   68 SKSCFSNSESPFKAIELNKESDGSDIQSAL 157
            +KS F   +     +EL++  DG  IQ+AL
Sbjct:   58 AKSVFRELDQVPYVVELDEREDGWSIQTAL 87          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 46.2098 bits (108), Expect = 3.958e-11
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  168 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 272
            TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:  109 TGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143          

HSP 2 Score: 40.817 bits (94), Expect = 3.958e-11
Identity = 15/35 (42.86%), Postives = 25/35 (71.43%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            QET+S+N VV+FSK+ C +C   K++F  + V ++
Sbjct:   54 QETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYK 88          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 41.9726 bits (97), Expect = 9.657e-11
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3
Query:  162 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 272
            E+ G++TVP VF+ GKHIGG D   A    G+L  LL
Sbjct:   91 EFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          

HSP 2 Score: 40.4318 bits (93), Expect = 9.657e-11
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQL 90
            Q  + SN +V+FSK++CP+C+  K +F QL
Sbjct:   38 QNAILSNKIVIFSKSYCPYCLRSKRIFSQL 67          

HSP 3 Score: 22.7126 bits (47), Expect = 9.657e-11
Identity = 14/31 (45.16%), Postives = 17/31 (54.84%), Query Frame = 2
Query:   68 SKSCFSN-SESPFKAIELNKESDGSDIQSAL 157
            SK  FS   E PF  +EL++  DG  IQ  L
Sbjct:   60 SKRIFSQLKEEPF-VVELDQREDGDQIQYEL 89          
The following BLAST results are available for this feature:
BLAST of CK740283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GRS12_ARATH6.001e-1368.42Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GLRX2_HUMAN2.896e-1254.29Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GLRX2_BOVIN2.902e-1254.29Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]
GLRX2_MOUSE3.770e-1254.29Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]
GRXC4_ARATH1.590e-1148.78Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GLRX2_RAT3.958e-1154.29Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
GRXC3_ARATH9.657e-1151.35Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6426 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740283 ID=CK740283; Name=CK740283; organism=Citrus sinensis; type=EST; length=362bp
CAGGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTG
TCCGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACCT
TTCAAGGCCATTGAACTGAACAAAGAAAGTGATGGAAGTGACATTCAATC
AGCTCTAGCCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATC
GGAGGGAAACACATTGGTGGCTGCGATTCAACTACTGCACTGCACAGGGA
AGGGAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAG
CTGCCTGATGGATGGCTATTGGCTGCCTGTTAATTCTAGTAATAAATAAA
GAATGTGTTGGT
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