CK740285

Overview
NameCK740285
Unique NameCK740285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1050..1610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.391e-54
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1
Query:  106 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 378
            IVQVSYAIGVPEPLSVFVD+YGTGKIPDK+ILKIVKE+FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VKPLKWEK  A
Sbjct:  303 IVQVSYAIGVPEPLSVFVDTYGTGKIPDKDILKIVKENFDFRPGMISINLDLKRGGNARFQKTAAYGHFGRDDPDFTWETVKPLKWEKVPA 393          

HSP 2 Score: 59.6918 bits (143), Expect = 1.391e-54
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRSGAYIVRQAAKSIVANG
Sbjct:  269 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 297          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK2_ORYSJ (S-adenosylmethionine synthetase 2 OS=Oryza sativa subsp. japonica GN=SAM2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.016e-54
Identity = 84/89 (94.38%), Postives = 88/89 (98.88%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 369
            CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKE+FDFRPGMMTINLDLKRGGN RF+KTAAYGHFGR+DPDFTWEVVKPLK+EK
Sbjct:  304 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGN-RFIKTAAYGHFGREDPDFTWEVVKPLKYEK 391          

HSP 2 Score: 56.225 bits (134), Expect = 4.016e-54
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRSGAYI RQAAKSIVA+G
Sbjct:  271 AFSGKDPTKVDRSGAYIARQAAKSIVASG 299          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK4_ARATH (S-adenosylmethionine synthetase 4 OS=Arabidopsis thaliana GN=METK4 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 4.016e-54
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  106 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 378
            IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEIL+IVKESFDFRPGM++INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLK  K QA
Sbjct:  303 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILEIVKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQA 393          

HSP 2 Score: 58.151 bits (139), Expect = 4.016e-54
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANGPCSQV 104
            AFSGKDPTKVDRSGAYIVRQAAKSIVA+G   +V
Sbjct:  269 AFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRV 302          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_WHEAT (S-adenosylmethionine synthetase OS=Triticum aestivum GN=SAMS PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.824e-54
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 378
            CIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKE+FDFRPGM+ INLDLKRGG GR+LKTAAYGHFGR+  DFTWEVVKPLKWEKP A
Sbjct:  305 CIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILEIVKENFDFRPGMIIINLDLKRGGKGRYLKTAAYGHFGREGADFTWEVVKPLKWEKPSA 396          

HSP 2 Score: 55.8398 bits (133), Expect = 6.824e-54
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRSGAY+ RQAAKSIVA+G
Sbjct:  272 AFSGKDPTKVDRSGAYVARQAAKSIVASG 300          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.159e-53
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKP 354
            CIVQVSYAIGVPEPLSV+VD+YGTGKIPDKEILKIVKE+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKP
Sbjct:  302 CIVQVSYAIGVPEPLSVYVDTYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKP 385          

HSP 2 Score: 59.6918 bits (143), Expect = 1.159e-53
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRSGAYIVRQAAKSIVANG
Sbjct:  269 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 297          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.512e-53
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 369
            CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEIL IVKE+FDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLK  K
Sbjct:  304 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILNIVKETFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGK 392          

HSP 2 Score: 59.6918 bits (143), Expect = 1.512e-53
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRSGAYIVRQAAKSIVANG
Sbjct:  271 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 299          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.971e-53
Identity = 80/92 (86.96%), Postives = 89/92 (96.74%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 378
            CIVQ+SYAIGVPEPLSVFVD+YGTGKIPDK+ILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  306 CIVQISYAIGVPEPLSVFVDTYGTGKIPDKDILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 396          

HSP 2 Score: 56.225 bits (134), Expect = 1.971e-53
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRSGAYI RQAAKSIVA+G
Sbjct:  273 AFSGKDPTKVDRSGAYIARQAAKSIVASG 301          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.419e-53
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 378
            C+VQVSYAIGV   LS+FVDSYGTG IPDKEIL+I+KE FDFRPGM+TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  302 CLVQVSYAIGVRGALSIFVDSYGTGSIPDKEILEIIKEHFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          

HSP 2 Score: 56.6102 bits (135), Expect = 7.419e-53
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRSGAYIVRQAAKSIVA G
Sbjct:  269 AFSGKDPTKVDRSGAYIVRQAAKSIVAAG 297          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.671e-53
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 378
            CIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKESFDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  306 CIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          

HSP 2 Score: 55.0694 bits (131), Expect = 9.671e-53
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRSGAYI RQAAKSIVA G
Sbjct:  273 AFSGKDPTKVDRSGAYIARQAAKSIVAAG 301          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.142e-52
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 378
            CIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  306 CIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          

HSP 2 Score: 55.0694 bits (131), Expect = 2.142e-52
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRSGAYI RQAAKSIVA G
Sbjct:  273 AFSGKDPTKVDRSGAYIARQAAKSIVAAG 301          
The following BLAST results are available for this feature:
BLAST of CK740285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_SUASA1.391e-5489.01S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]
METK2_ORYSJ4.016e-5494.38S-adenosylmethionine synthetase 2 OS=Oryza sativa ... [more]
METK4_ARATH4.016e-5492.31S-adenosylmethionine synthetase 4 OS=Arabidopsis t... [more]
METK_WHEAT6.824e-5488.04S-adenosylmethionine synthetase OS=Triticum aestiv... [more]
METK_CARPA1.159e-5394.05S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK_MEDFA1.512e-5391.01S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK1_BETVU1.971e-5386.96S-adenosylmethionine synthetase 1 OS=Beta vulgaris... [more]
METK2_PINCO7.419e-5385.87S-adenosylmethionine synthetase 2 OS=Pinus contort... [more]
METK3_ATRNU9.671e-5388.04S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK4_ATRNU2.142e-5286.96S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6428 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740285 ID=CK740285; Name=CK740285; organism=Citrus sinensis; type=EST; length=563bp
GTGCTTTCTCTGGAAAAGACCCTACTAAGGTGGATAGGAGTGGTGCATAC
ATTGTTAGGCAGGCTGCTAAGAGCATTGTTGCAAACGGGCCTTGCTCGCA
GGTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCT
GTTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAGGAGATCCT
CAAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGATGACCATCA
ATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCC
TATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGAAGTTGTGAA
GCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAA
AACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGATGAATAATT
TGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATCTCCTGTGTT
CAGAACTCATACATGTTCCCCCATTCAATTCCTTTCTTTTTCTTCTTTCC
CACTTCTTTTTTG
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