CK740285

Overview
NameCK740285
Unique NameCK740285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_DESVM (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.022e-20
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 342
            C VQ++Y IGV EP+SV V S G+ ++ D+ + + V+E FD RP  +   LDL R   G   KT  YGHFGR+ P+FTWE
Sbjct:  299 CEVQIAYCIGVAEPVSVLVSSLGSSELSDEVLTRAVREVFDLRPYHIIKRLDLNRPIYG---KTTCYGHFGRELPEFTWE 375          

HSP 2 Score: 40.4318 bits (93), Expect = 1.022e-20
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKD +KVDRSGAY+ R  AK++V  G
Sbjct:  266 AFSGKDASKVDRSGAYMGRYIAKNVVKAG 294          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_PSYA2 (S-adenosylmethionine synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=metK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.022e-20
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPD--FTWEVV 348
            C VQVSYAIGV EP S+ ++++GT KI + EI+++++  FD RP  +T  L+L +     + +TA++GHFGR   +  FTWE +
Sbjct:  296 CEVQVSYAIGVAEPTSISINTFGTNKISNDEIIRLIRTHFDLRPYGITRMLNLLQ---PMYQQTASFGHFGRQGSETAFTWEKI 376          

HSP 2 Score: 45.8246 bits (107), Expect = 1.022e-20
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDP+KVDRS AY VR  AK+IVA G
Sbjct:  263 AFSGKDPSKVDRSAAYAVRYVAKNIVAAG 291          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_SALRD (S-adenosylmethionine synthetase OS=Salinibacter ruber (strain DSM 13855) GN=metK PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-20
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  109 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV---VKPLKWEKP 372
            VQ++YAIGV EP+S+ V + GTG +PD E+ ++V+E F+  P  +   LDL +    R+ KTAAYGHFGR  P F WE    V+ LK + P
Sbjct:  297 VQLAYAIGVAEPVSIDVSTNGTGVLPDTELCEMVREHFELSPSAIIDRLDLLK---PRYQKTAAYGHFGR--PTFPWEELTHVEALKRDAP 382          

HSP 2 Score: 42.3578 bits (98), Expect = 1.022e-20
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANGPCSQ 101
            AFSGKDP+KVDRS  Y  R  AK++VA   C +
Sbjct:  262 AFSGKDPSKVDRSATYAARHVAKNLVAAELCDE 294          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_SALHS (S-adenosylmethionine synthetase OS=Salmonella heidelberg (strain SL476) GN=metK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.022e-20
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 342
            C +QVSYAIGV EP S+ V+++GT K+P ++++ +V+E FD RP  +   LDL    +  + +TAAYGHFGR+  +F WE
Sbjct:  295 CEIQVSYAIGVAEPTSIMVETFGTEKVPVEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWE 369          

HSP 2 Score: 44.2838 bits (103), Expect = 1.022e-20
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDP+KVDRS AY  R  AK+IVA G
Sbjct:  262 AFSGKDPSKVDRSAAYAARYVAKNIVAAG 290          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.023e-20
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 363
            C+VQ+SYAIGV EPLS+FV++YGT      E+++I++++FD RPG++  +L L+      +L TA+YGHF   D    WE  K LK+
Sbjct:  301 CLVQLSYAIGVAEPLSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKSLKLQ---TPFYLSTASYGHF--TDQSKPWEQPKELKF 382          

HSP 2 Score: 40.0466 bits (92), Expect = 1.023e-20
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKD +KVDRS AY  R  AKS+VA G
Sbjct:  268 AFSGKDYSKVDRSAAYAARWIAKSLVAAG 296          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_SYNP2 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=metK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.328e-20
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKR---GGNGRFLK-TAAYGHFGRDDPDFTWE 342
            C VQVSYAIGV  P+SV ++++GT  + +  +L++V++ F+ RP  +    DL+      NGRF +  AAYGHFGR D D  WE
Sbjct:  316 CEVQVSYAIGVARPVSVMIETFGTCTVDEDRLLEVVQKHFELRPAGIIQAFDLRNLPSQRNGRFYQDMAAYGHFGRTDLDLPWE 399          

HSP 2 Score: 44.2838 bits (103), Expect = 1.328e-20
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRS +Y  R  AK+IVA G
Sbjct:  283 AFSGKDPTKVDRSASYACRYVAKNIVAAG 311          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_STRMK (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=metK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.329e-20
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTW 339
            C VQVSYAIGV EP S+ V ++GTGKI D +I K++++ FD RP  +   LDL    +  + +TAAYGHFGR   +F++
Sbjct:  297 CEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLI---HPMYQQTAAYGHFGRKPKEFSY 372          

HSP 2 Score: 43.8986 bits (102), Expect = 1.329e-20
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDP+KVDRS AY  R  AK++VA G
Sbjct:  264 AFSGKDPSKVDRSAAYAARYVAKNVVAAG 292          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_MYCA1 (S-adenosylmethionine synthetase OS=Mycobacterium avium (strain 104) GN=metK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.329e-20
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  109 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 342
            VQV+YAIG   P+ +F++++GT  +   +I KIV E FD RPG +  +LDL R     + +TAAYGHFGR D +  WE
Sbjct:  317 VQVAYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLR---PIYAQTAAYGHFGRTDVELPWE 391          

HSP 2 Score: 45.0542 bits (105), Expect = 1.329e-20
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANGPCSQV 104
            AFSGKDP+KVDRS AY +R  AK+IVA G   +V
Sbjct:  282 AFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERV 315          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_PEDPA (S-adenosylmethionine synthetase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=metK PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.329e-20
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  109 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 342
            VQ++YAIGV EP+SV VD++GTG + ++++ + V++ FD RP  +   LDLKR     + +TAAYGHFGR D +  WE
Sbjct:  308 VQIAYAIGVAEPVSVMVDTFGTGTVSEEKLTQAVRKIFDLRPAGIIEMLDLKR---PIYKQTAAYGHFGRTDVELPWE 382          

HSP 2 Score: 39.6614 bits (91), Expect = 1.329e-20
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVA 83
            AFSGKD TKVDRS +Y  R  AK+IVA
Sbjct:  273 AFSGKDATKVDRSASYAARYIAKNIVA 299          
BLAST of CK740285 vs. ExPASy Swiss-Prot
Match: METK_NITHX (S-adenosylmethionine synthetase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=metK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.329e-20
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  103 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGR---DDPDFTWE 342
            C +Q++YAIGV  PLS+++D++GTGK P+  + +IV E+ D  P  +  +LDL R     + +T++YGHFGR   ++  F+WE
Sbjct:  307 CTLQLAYAIGVARPLSIYIDTHGTGKAPEDTLERIVSEAMDLTPRGIRKHLDLNR---PIYARTSSYGHFGRTPDNEGGFSWE 386          

HSP 2 Score: 45.4394 bits (106), Expect = 1.329e-20
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 AFSGKDPTKVDRSGAYIVRQAAKSIVANG 89
            AFSGKDPTKVDRS AY  R  AK+IVA G
Sbjct:  274 AFSGKDPTKVDRSAAYAARYLAKNIVAAG 302          
The following BLAST results are available for this feature:
BLAST of CK740285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_DESVM1.022e-2048.75S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]
METK_PSYA21.022e-2044.05S-adenosylmethionine synthetase OS=Psychrobacter a... [more]
METK_SALRD1.022e-2047.25S-adenosylmethionine synthetase OS=Salinibacter ru... [more]
METK_SALHS1.022e-2047.50S-adenosylmethionine synthetase OS=Salmonella heid... [more]
METK_SCHPO1.023e-2045.98S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK_SYNP21.328e-2045.24S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_STRMK1.329e-2049.37S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_MYCA11.329e-2047.44S-adenosylmethionine synthetase OS=Mycobacterium a... [more]
METK_PEDPA1.329e-2048.72S-adenosylmethionine synthetase OS=Pediococcus pen... [more]
METK_NITHX1.329e-2042.17S-adenosylmethionine synthetase OS=Nitrobacter ham... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6428 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740285 ID=CK740285; Name=CK740285; organism=Citrus sinensis; type=EST; length=563bp
GTGCTTTCTCTGGAAAAGACCCTACTAAGGTGGATAGGAGTGGTGCATAC
ATTGTTAGGCAGGCTGCTAAGAGCATTGTTGCAAACGGGCCTTGCTCGCA
GGTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCT
GTTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAGGAGATCCT
CAAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGATGACCATCA
ATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCC
TATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGAAGTTGTGAA
GCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAA
AACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGATGAATAATT
TGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATCTCCTGTGTT
CAGAACTCATACATGTTCCCCCATTCAATTCCTTTCTTTTTCTTCTTTCC
CACTTCTTTTTTG
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