CK740295

Overview
NameCK740295
Unique NameCK740295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740295_ssr491 microsatellite CK740295_ssr491:491..506. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:429..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 8.106e-47
Identity = 81/126 (64.29%), Postives = 104/126 (82.54%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 379
            QHFD+++P +  I  Y  G+VPV Y+RVPC ++GG+RFTING  YF LVL++NVGG G + +VSIKGSRTGW  MSRNWG NWQSN YL+GQSLSF+VT+SDG+T+T  +VAPAGW+FG+T+S +Q
Sbjct:  133 QHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFSTSQ 258          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.383e-46
Identity = 88/128 (68.75%), Postives = 101/128 (78.91%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQF 382
            +HFD+SQP ++ IA YRAG+VPV YRRVPC R GGIRF +NGHSYF LVL+TNVGG+G V  + IKGS TGW  MSRNWG NWQSN  L+GQ+LSF V   DGR VT+ +VAPAGWSFG TY S AQF
Sbjct:  123 RHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGATYTSSAQF 250          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.997e-45
Identity = 83/123 (67.48%), Postives = 97/123 (78.86%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 370
            QHFD+SQP +++IA Y+AG+VPV Y+RVPC R GGIRF I+GH YF LV +TNVGG+G V  +SIKGS TGW  MSRNWG NWQSN YL GQSLSF V   DGR VT++NVAP+ W FG TYS
Sbjct:  127 QHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNWFFGATYS 249          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.437e-43
Identity = 76/128 (59.38%), Postives = 101/128 (78.91%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQF 382
            QHFD++QP ++ I  YR G+VPV ++RV C R+GG+RFTING+SYF LVLITNVGG G + +V IKG++TGW  MSRNWG NWQ+N YLN Q++SF VT++ G+T+   +VAP+ W FG+T+ SG QF
Sbjct:  122 QHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTFTSGVQF 249          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.603e-42
Identity = 77/123 (62.60%), Postives = 95/123 (77.24%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 370
            +HFD+SQP +  IA Y+AG+VPV ++RVPC + GGIRFTI+G  YF LV + NVGG+G V  VSIKGS+T W  MSRNWGQNWQSN YLN QSLSF+V   D R VT +N+AP+ W+FG TY+
Sbjct:  121 KHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNWNFGTTYT 243          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.025e-41
Identity = 74/123 (60.16%), Postives = 94/123 (76.42%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 370
            +HFD++QP ++ I  YR G+VPV ++RV C ++GG+RF ING  YF LV I NVGGAG + +VSIKGS+TGW  MSRNWG NWQSN YL+GQ+LSF +TT+DG T    NV P+ WSFG+ YS
Sbjct:  125 KHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYS 247          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.934e-40
Identity = 75/122 (61.48%), Postives = 89/122 (72.95%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 367
            +HFD+SQP ++ IA Y +G+VPV Y R PC R GGIRF I GH Y+ LVL+TNV G+G V A  +KGS T W  MSRNWG+NWQSN YL GQ+LSF V   DG  VT+Y+VAPA W FG TY
Sbjct:  125 RHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANWQFGSTY 246          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 9.597e-40
Identity = 71/127 (55.91%), Postives = 91/127 (71.65%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR--TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 379
            HFD++QP ++ I  YR G+VPVA+RRVPC RRGG+RFT+ G  YF LVL+TNV  AG V ++ ++GSR   GW  MSRNWG NWQS  YL+GQ LSF VT +DG+T+    V P  W FG+T++  Q
Sbjct:  134 HFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSWRFGQTFASTQ 260          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.637e-39
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQFR 385
            HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM RNWG NW S +YL GQ LSF VT  DG+T+   N+ P+GW FG+T+ S  QF+
Sbjct:  150 HFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 278          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 2.792e-39
Identity = 73/123 (59.35%), Postives = 92/123 (74.80%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 370
            +HFD+SQP ++ I  YRAG+VPV YRRV C RRGG+RFT+ G  +F LVL+ NV G+G V AVS++G+ TGW  MSRNWG NWQS   L GQ LSF VTT+ G+ +   +VAPAGW FG+T+S
Sbjct:  126 RHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTFS 248          
The following BLAST results are available for this feature:
BLAST of CK740295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXPA1_ORYSJ8.106e-4764.29Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA8_ORYSJ1.383e-4668.75Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ORYSJ1.997e-4567.48Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP12_ORYSJ5.437e-4359.38Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP33_ORYSJ4.603e-4262.60Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.025e-4160.16Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA9_ORYSJ1.934e-4061.48Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP29_ORYSJ9.597e-4055.91Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ1.637e-3955.81Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ2.792e-3959.35Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6439 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740295 ID=CK740295; Name=CK740295; organism=Citrus sinensis; type=EST; length=564bp
GCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACA
GAGCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGG
GGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTT
GATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAG
GATCTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGG
CAAAGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCAC
AAGCGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGT
CCTTTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGAC
CATTAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCCGTGTACT
AAGTAGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATATATAT
ATATATAATATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCA
AAAATGAAAAAAAA
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