CK740295

Overview
NameCK740295
Unique NameCK740295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740295_ssr491 microsatellite CK740295_ssr491:491..506. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:429..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.863e-13
Identity = 48/141 (34.04%), Postives = 68/141 (48.23%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG---GIRFTINGHSYFNLVLITNVGGAGDVHAVSI-----KGSRTGWQPMSRNWGQNWQSNTYLNGQS-----LSFEVTTSDGRTVTSYNVAPAGWSFGRTY 367
            HFDLS   F  +A+         AG +PV Y RVPC  +G     R     + Y+  VL+ +  G GD+ AV +      G    W  M ++WG  W+ N+   G +     +S  +T+  GRT+ + NV PAGW  G TY
Sbjct:  126 HFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS---GPAPLQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTY 263          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG-GIRFTIN--GHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSL----SFEVTTSDGRTVTSYNVAPAGWSFGRTY 367
            HFD+S      +A+         AG++ V YRRVPC   G  I F ++   + ++  VLI    G GD++AV +  +  GW PM +NWG  W+ N+   G++L    S  +T+  G+ + + NV PA W  G TY
Sbjct:  152 HFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTY 285          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 2
Query:    5 HFDLSQPVFQHIA------QYRA-GVVPVAYRRVPCGRRGGIRFTI-----NGHSYFNLVLITNVGGAGDVHAVSIK--GSRTGWQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 370
            HFDLS   F  +A      Q RA GV+ + Y RVPC   GG+  T      +  SYF  VL+    G GD+  + +   G+   W PM ++WG  W+ +     Q+ LS  +T+S G+T+ + NV P+GW  G +Y+
Sbjct:  125 HFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNW-GGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLSAGAALQAPLSIRLTSSSGKTLVASNVIPSGWKPGASYT 259          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 46/135 (34.07%), Postives = 69/135 (51.11%), Query Frame = 2
Query:    5 HFDLSQPVFQHIA------QYRA-GVVPVAYRRVPCGRRGGIRFT----INGHSYFNLVLITNVGGAGDVHAVSIK--GSRTGWQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGWSFGRTY 367
            HFDLS   F  +A      Q RA GV+ + Y RVPC   GG++ T    +  +  +  VL+    G GD+  V +   G+   W  M ++WG  W+ N     Q+  S  +T+S G+T+ + NV P+GW  G +Y
Sbjct:  125 HFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNW-GGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSY 258          
The following BLAST results are available for this feature:
BLAST of CK740295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXB14_ORYSJ5.863e-1334.04Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB11_ORYSJ1.000e-1234.81Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB18_ORYSJ2.228e-1235.77Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB15_ORYSJ8.466e-1234.07Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6439 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740295 ID=CK740295; Name=CK740295; organism=Citrus sinensis; type=EST; length=564bp
GCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACA
GAGCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGG
GGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTT
GATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAG
GATCTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGG
CAAAGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCAC
AAGCGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGT
CCTTTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGAC
CATTAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCCGTGTACT
AAGTAGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATATATAT
ATATATAATATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCA
AAAATGAAAAAAAA
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