CK740300
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.546e-32 Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 2 Query: 2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 301 QV+LMG +EGYR+ +FDPLGLADDPD FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP++NL DH+A+P NNA+A+AT F P Sbjct: 152 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.546e-32 Identity = 68/100 (68.00%), Postives = 75/100 (75.00%), Query Frame = 2 Query: 2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 301 QVVLMG +EGYR+ +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL DH+ADP NNA+A AT F P Sbjct: 155 QVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.081e-29 Identity = 65/103 (63.11%), Postives = 70/103 (67.96%), Query Frame = 2 Query: 2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 304 QVVLMG E YR FDPLGLADDPD FAELKVKE+KNGRLAMFS GFFVQAIVTGKGP++NL DH+ADP N A+A AT F PG Sbjct: 150 QVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.024e-24 Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 2 Query: 2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 304 +V+LMG VEGYRI +FD LGLA+D + FAELKVKELKNGRLAMFSMFGFFVQAIV+ K +ENL DH+ V NNA + TNFVPG Sbjct: 168 KVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.513e-22 Identity = 57/104 (54.81%), Postives = 64/104 (61.54%), Query Frame = 2 Query: 2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA-WAYATNFVP 301 QV+LMG VEGYR FDPLGLADDPD F ELKVKE+KNGRLAM M GF+ QAIVTG+GP+EN H+ DP A+N A T F P Sbjct: 18 QVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20 Identity = 51/90 (56.67%), Postives = 61/90 (67.78%), Query Frame = 2 Query: 2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 271 +VVL+G E YRI FDPLGLA DP+Q A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL H++DP NN Sbjct: 178 EVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.710e-16 Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2 Query: 92 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 271 F+PLG D ELK+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN Sbjct: 206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.243e-15 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2 Query: 92 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 271 F+PLG D ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN Sbjct: 208 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.231e-13 Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 2 Query: 89 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 271 AFDPLG + DP +F ELK+KE+KNGRLAM + GF V Q+ G GP+ENL H+ADP NN Sbjct: 171 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.231e-13 Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2 Query: 89 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 271 AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+ G GP+ENL H+ADP NN Sbjct: 172 AFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233 The following BLAST results are available for this feature:
BLAST of CK740300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740300 ID=CK740300; Name=CK740300; organism=Citrus sinensis; type=EST; length=417bpback to top |