CK740300

Overview
NameCK740300
Unique NameCK740300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5353 contig Csv1_Contig5353:1108..1524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.546e-32
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:    2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 301
            QV+LMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP++NL DH+A+P  NNA+A+AT F P
Sbjct:  152 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.546e-32
Identity = 68/100 (68.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:    2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 301
            QVVLMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL DH+ADP  NNA+A AT F P
Sbjct:  155 QVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.081e-29
Identity = 65/103 (63.11%), Postives = 70/103 (67.96%), Query Frame = 2
Query:    2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 304
            QVVLMG  E YR                    FDPLGLADDPD FAELKVKE+KNGRLAMFS  GFFVQAIVTGKGP++NL DH+ADP  N A+A AT F PG
Sbjct:  150 QVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.024e-24
Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 2
Query:    2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 304
            +V+LMG VEGYRI                +FD LGLA+D + FAELKVKELKNGRLAMFSMFGFFVQAIV+ K  +ENL DH+   V NNA +  TNFVPG
Sbjct:  168 KVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.513e-22
Identity = 57/104 (54.81%), Postives = 64/104 (61.54%), Query Frame = 2
Query:    2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA-WAYATNFVP 301
            QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNGRLAM  M GF+ QAIVTG+GP+EN   H+ DP A+N   A  T F P
Sbjct:   18 QVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 51/90 (56.67%), Postives = 61/90 (67.78%), Query Frame = 2
Query:    2 QVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 271
            +VVL+G  E YRI                 FDPLGLA DP+Q A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP  NN
Sbjct:  178 EVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.710e-16
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   92 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 271
            F+PLG   D     ELK+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct:  206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.243e-15
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:   92 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 271
            F+PLG   D     ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct:  208 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.231e-13
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 2
Query:   89 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 271
            AFDPLG + DP +F ELK+KE+KNGRLAM +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  171 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.231e-13
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   89 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 271
            AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  172 AFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CK740300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2_CHLRE1.546e-3265.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.546e-3268.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE6.081e-2963.11Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.024e-2460.40Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_EUGGR5.513e-2254.81Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH1.358e-2056.67Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC7.710e-1660.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.243e-1558.33Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU1.231e-1359.68Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.231e-1359.68Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6444 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740300 ID=CK740300; Name=CK740300; organism=Citrus sinensis; type=EST; length=417bp
CCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTC
CTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCA
CTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGA
GCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTGTTC
AGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCACATT
GCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGTTCC
CGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTAACA
TTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGACTTA
CTAGTAGCCTCTGTAAT
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