CK740300

Overview
NameCK740300
Unique NameCK740300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5353 contig Csv1_Contig5353:1108..1524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 2 
Query:   92 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 262
            FDPLGLA DP++ A+L++ E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:  223 FDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279
[Close]
BLAST of CK740300 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.505e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:   92 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 262
            FDPLGLA DP + A+L++ E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:  220 FDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276
The following BLAST results are available for this feature:
BLAST of CK740300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB4A_ARATH3.960e-1254.39Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.505e-1154.39Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6444 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740300 ID=CK740300; Name=CK740300; organism=Citrus sinensis; type=EST; length=417bp
CCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTC
CTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCA
CTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGA
GCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTGTTC
AGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCACATT
GCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGTTCC
CGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTAACA
TTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGACTTA
CTAGTAGCCTCTGTAAT
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