CK740303

Overview
NameCK740303
Unique NameCK740303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.384e-40
Identity = 85/117 (72.65%), Postives = 92/117 (78.63%), Query Frame = 2
Query:  152 TRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQP-FYMQL-PATTLTMCPSCERV 496
            +RKKLRLSK+QSA LE+SF+EH T               RPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCETLTEENRRLQKE+QELRALK   P  YM + P TTLTMCPSCERV
Sbjct:   80 SRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERV 196          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.384e-40
Identity = 94/165 (56.97%), Postives = 107/165 (64.85%), Query Frame = 2
Query:    5 LSSPNSTVSSFQMDHFCIRNGRSKRDLFDVEISHXXXXXXXXXXXXNGLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQL-PATTLTMCPSCERV 496
            +SSPNSTVSS           RS+R+    E +                +RKKLRLSK+QSA LEE+FK+H+T               R RQVEVWFQNRRARTKLKQTEVDCE+L+RCCE LTEENRRLQKE+ ELRALK S  FYM + P TTLTMCPSCE V
Sbjct:   89 VSSPNSTVSSST-------GKRSERE----EDTDPQGSRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHMSPPTTLTMCPSCEHV 242          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 5.773e-40
Identity = 98/183 (53.55%), Postives = 111/183 (60.66%), Query Frame = 2
Query:    5 LSSPNSTVSSFQMDHFCIRNGRSKRDLF------------DVEISHXXXXXXXXXXXXNGL------TRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQL-PATTLTMCPSCERV 496
            +SSPNSTVSS       +   +S+R+L             D EI              +G       +RKKLRLSKEQ+  LEE+FKEH+T               R RQVEVWFQNRRARTKLKQTEVDCEYLKRCCE LT+ENRRLQKE+ ELRALK S   YM + P TTLTMCPSCERV
Sbjct:   99 VSSPNSTVSSV------MSGKKSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERV 275          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.887e-39
Identity = 97/172 (56.40%), Postives = 104/172 (60.47%), Query Frame = 2
Query:    5 LSSPNSTVSSFQMDHFCIRNG------RSKRDLFDVEISHXXXXXXXXXXXXNGLT-RKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQL-PATTLTMCPSCERV 496
            +SSPNST+SS        R G       S  D  ++                 G T RKKLRLSK+QSAFLEE+FKEHNT                 RQVEVWFQNRRARTKLKQTEVDCEYLKRC E LTEENRRLQKE  ELR LK S  FY Q+ P TTL MCPSCERV
Sbjct:   72 VSSPNSTISSTISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGTSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQMTPPTTLIMCPSCERV 243          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.382e-39
Identity = 81/116 (69.83%), Postives = 89/116 (76.72%), Query Frame = 2
Query:  152 TRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQL-PATTLTMCPSCERV 496
            +RKKLRLSK+Q+  LEE+FKEH+T               R RQVEVWFQNRRARTKLKQTEVDCEYLKRCC+ LTEENRRLQKE+ ELRALK S   YM + P TTLTMCPSCERV
Sbjct:  161 SRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPHLYMHMTPPTTLTMCPSCERV 276          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.502e-37
Identity = 81/125 (64.80%), Postives = 92/125 (73.60%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALK----TSQPFYMQ----LPATTLTMCPSCERV 496
            G +RKKLRLSK+Q+A LE++FKEHNT               +PRQVEVWFQNRRARTKLKQTEVDCE LKRCCETLT+ENRRL +ELQELRALK     + P ++      P TTLTMCPSCERV
Sbjct:  153 GGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERV 277          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.502e-37
Identity = 81/125 (64.80%), Postives = 92/125 (73.60%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALK----TSQPFYMQ----LPATTLTMCPSCERV 496
            G +RKKLRLSK+Q+A LE++FKEHNT               +PRQVEVWFQNRRARTKLKQTEVDCE LKRCCETLT+ENRRL +ELQELRALK     + P ++      P TTLTMCPSCERV
Sbjct:  153 GGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERV 277          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.974e-37
Identity = 80/121 (66.12%), Postives = 91/121 (75.21%), Query Frame = 2
Query:  152 TRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRAL--KTSQPFYM----QLPATTLTMCPSCERV 496
            +RKKLRLSKEQSA LE+ FKEH+T               RPRQVEVWFQNRRARTKLKQTEVDCE LKRCCETLTEENRRL +ELQ+LRAL   T+  F+M     +PA TL++CPSCER+
Sbjct:   92 SRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERL 212          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.974e-37
Identity = 80/121 (66.12%), Postives = 91/121 (75.21%), Query Frame = 2
Query:  152 TRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRAL--KTSQPFYM----QLPATTLTMCPSCERV 496
            +RKKLRLSKEQSA LE+ FKEH+T               RPRQVEVWFQNRRARTKLKQTEVDCE LKRCCETLTEENRRL +ELQ+LRAL   T+  F+M     +PA TL++CPSCER+
Sbjct:   92 SRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERL 212          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.802e-37
Identity = 94/172 (54.65%), Postives = 103/172 (59.88%), Query Frame = 2
Query:    5 LSSPNSTVSSFQMD--HFCIRNGRSKR---DLFDVEISHXXXXXXXXXXXXNG--LTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQL-PATTLTMCPSCERV 496
            +SSPNST+SS          R G S     D  D+ +               G    RKKLRLSK+QSA LE++FKEHNT                 RQVEVWFQNRRARTKLKQTEVDCEYLKRC E LTEENRRL+KE  ELRALK S   Y Q+ P TTL MCPSCERV
Sbjct:   77 VSSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLDRSSSRGTSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMSPPTTLLMCPSCERV 248          
The following BLAST results are available for this feature:
BLAST of CK740303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HOX17_ORYSI3.384e-4072.65Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HAT4_ARATH3.384e-4056.97Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HAT3_ARATH5.773e-4053.55Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HAT2_ARATH4.887e-3956.40Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
ATHB4_ARATH6.382e-3969.83Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HOX1_ORYSJ3.502e-3764.80Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI3.502e-3764.80Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX15_ORYSJ5.974e-3766.12Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI5.974e-3766.12Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HAT1_ARATH7.802e-3754.65Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6447 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740303 ID=CK740303; Name=CK740303; organism=Citrus sinensis; type=EST; length=570bp
GGCGCTGTCATCTCCGAACAGTACGGTGTCGTCTTTTCAAATGGATCACT
TTTGTATAAGAAACGGAAGGAGCAAGAGAGATTTATTCGATGTTGAAATA
AGTCATGACAGAGCAAGTTCAAGAGCAAGTGATGATGAAGAAAATGGCTT
AACAAGAAAAAAGCTGAGGCTCTCTAAAGAACAATCTGCTTTTCTCGAAG
AAAGTTTCAAAGAACACAATACCCTCAATCCCAAGCAAAAGCTTGCTTTG
GCCAAACAATTGAATCTCCGTCCTCGCCAAGTTGAAGTGTGGTTTCAAAA
CCGGAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTGGATTGTGAGTATT
TAAAGAGATGCTGTGAGACATTGACGGAAGAGAACAGGAGGTTACAGAAA
GAGCTGCAAGAATTAAGAGCTTTAAAAACCTCTCAACCTTTTTACATGCA
GCTCCCTGCCACTACTCTCACTATGTGTCCTTCTTGCGAGCGCGTGGGCA
CCGGCTCCACCTCCGGCGGCACAGCCACCACTGCAGCAGCTGCTACCACC
GCCGCTAAGGGCAACAACAG
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